Factsheet for GSMUA_Achr10P26950_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, plasma membrane, plastid

Predictor Summary:

nucleus 1
extracellular 4
golgi 3
plasma membrane 4
endoplasmic reticulum 3
vacuole 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P11740_001
GSMUA_Achr2P11540_001
GSMUA_Achr3P09440_001
GSMUA_Achr5P27670_001
GSMUA_Achr6P15930_001
GSMUA_Achr6P35890_001
GSMUA_Achr8P21550_001
GSMUA_Achr9P17080_001
GSMUA_Achr9P17620_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25490.1	GSMUA_Achr10P...	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr11P...	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr2P11540_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr3P09440_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr5P27670_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr6P15930_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr8P21550_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr9P17080_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr10P...	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr11P...	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr2P11540_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr3P09440_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr5P27670_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr6P15930_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr8P21550_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr9P17080_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr10P...	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr11P...	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr2P11540_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr3P09440_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr5P27670_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr6P15930_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr8P21550_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr9P17080_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr1P11740_001	AT3G28715.1	21798944
AT2G25490.1	GSMUA_Achr6P35890_001	AT3G28715.1	21798944
AT2G25490.1	GSMUA_Achr9P17620_001	AT4G02570.1	14675533
AT5G25350.1	GSMUA_Achr10P...	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr11P...	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr2P11540_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr3P09440_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr5P27670_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr6P15930_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr8P21550_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr9P17080_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr10P...	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr11P...	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr2P11540_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr3P09440_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr5P27670_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr6P15930_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr8P21550_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr9P17080_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr9P17620_001	AT4G02570.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P05220_001	Banana	cytosol	74.1	75.69
GSMUA_Achr4P30680_001	Banana	cytosol	73.2	75.0
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	71.86	73.39
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	71.86	71.86
VIT_11s0016g05410.t01	Wine grape	cytosol	53.89	54.3
HORVU7Hr1G090240.1	Barley	cytosol	43.71	54.17
Zm00001d053642_P001	Maize	cytosol	52.54	53.92
Zm00001d015778_P001	Maize	cytosol	51.8	53.81
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	52.69	53.74
PGSC0003DMT400007545	Potato	cytosol	51.2	53.69
Solyc12g009560.1.1	Tomato	cytosol	50.3	52.75
KRH03688	Soybean	cytosol	50.3	52.58
KRH20255	Soybean	cytosol	50.3	52.58
KRH15886	Soybean	cytosol	50.6	52.48
TraesCS6A01G181900.1	Wheat	cytosol	50.9	52.39
VIT_04s0008g05470.t01	Wine grape	cytosol	52.25	52.32
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	20.81	52.26
TraesCS6B01G210700.1	Wheat	cytosol	50.75	52.23
TraesCS6D01G169200.1	Wheat	cytosol	50.75	52.23
KRH52439	Soybean	cytosol, nucleus, peroxisome	49.7	52.04
KRH62989	Soybean	cytosol	50.6	52.0
EER90022	Sorghum	cytosol, plastid	48.65	51.92
HORVU6Hr1G038430.3	Barley	plastid	50.75	51.91
KRH61771	Soybean	cytosol	49.25	51.73
Os02t0200900-01	Rice	cytosol	50.9	51.52
KRH05167	Soybean	cytosol	47.01	51.48
TraesCS7B01G278800.1	Wheat	cytosol	49.85	51.47
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	49.25	51.25
PGSC0003DMT400040977	Potato	nucleus	51.2	51.12
TraesCS7D01G373800.1	Wheat	cytosol	49.7	51.0
AT2G25490.1	Thale cress	plastid	47.75	50.8
TraesCS7A01G377500.1	Wheat	cytosol	49.25	50.69
Os06t0605900-01	Rice	cytosol	47.46	50.56
Solyc08g060810.2.1	Tomato	plastid	50.3	50.53
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	48.35	50.39
AT5G25350.1	Thale cress	cytosol	46.86	50.24
CDX87090	Canola	cytosol	45.06	48.86
CDX76980	Canola	cytosol	43.71	48.75
CDX80503	Canola	cytosol	45.21	48.63
Bra036542.1-P	Field mustard	cytosol	44.76	48.54
CDY19807	Canola	cytosol	44.61	48.38
Bra034254.1-P	Field mustard	cytosol	44.91	48.23
CDX88173	Canola	cytosol	44.91	48.23
Bra009835.1-P	Field mustard	cytosol	44.76	48.07
CDY35358	Canola	cytosol	44.76	47.99
PGSC0003DMT400089433	Potato	mitochondrion	32.78	47.71
PGSC0003DMT400094835	Potato	cytosol	16.62	45.31
HORVU5Hr1G029670.1	Barley	mitochondrion	33.83	44.05
Zm00001d000408_P001	Maize	cytosol	48.8	43.88
Zm00001d036880_P003	Maize	cytosol	48.05	43.61
PGSC0003DMT400042949	Potato	cytosol	35.93	43.48
Solyc06g049010.1.1	Tomato	plastid	40.12	43.23
HORVU5Hr1G000950.4	Barley	plastid	28.59	42.73
Solyc06g030610.1.1	Tomato	cytosol	16.92	41.24
Solyc06g030620.1.1	Tomato	cytosol	12.28	40.8
KRH04870	Soybean	cytosol	16.32	40.07
GSMUA_Achr2P17760_001	Banana	cytosol	13.62	25.71
GSMUA_Achr8P13910_001	Banana	mitochondrion	13.62	25.71
GSMUA_Achr5P19410_001	Banana	cytosol	16.32	25.65
GSMUA_Achr8P15580_001	Banana	cytosol	14.97	24.51
GSMUA_AchrUn_...	Banana	cytosol	13.32	24.18
GSMUA_Achr9P11380_001	Banana	cytosol	16.02	23.88
GSMUA_Achr8P28940_001	Banana	cytosol	13.32	23.42
GSMUA_Achr10P...	Banana	cytosol	12.28	23.1
GSMUA_Achr6P18620_001	Banana	cytosol	12.43	22.62
GSMUA_Achr3P22880_001	Banana	cytosol	21.26	22.19
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	22.75	21.29
GSMUA_Achr7P22290_001	Banana	cytosol	22.75	21.23
GSMUA_Achr2P05250_001	Banana	cytosol	15.42	21.19
GSMUA_Achr3P28280_001	Banana	plastid	15.57	21.1
GSMUA_Achr11P...	Banana	cytosol	20.36	20.73
GSMUA_Achr6P20450_001	Banana	cytosol	19.91	20.15
GSMUA_Achr9P22570_001	Banana	plastid	13.02	19.77
GSMUA_Achr4P12920_001	Banana	plastid	14.22	18.59
GSMUA_Achr9P18840_001	Banana	plastid	15.12	13.84

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr10G26950_001	EnsemblPlants:GSMUA_Achr10P26950_001	EnsemblPlants:GSMUA_Achr10T26950_001
InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
UniProt:M0RLR9	PFAM:PF12937	PFAM:PF13516	PANTHER:PTHR44327	PANTHER:PTHR44327:SF1	SMART:SM00256
SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002967192	SEG:seg	:

Description

Putative EIN3-binding F-box protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G26950_001]

Coordinates

chr10:-:30264761..30267459

Molecular Weight (calculated)

71771.6 Da

IEP (calculated)

7.743

GRAVY (calculated)

0.168

Length

668 amino acids

Sequence
(BLAST)

001: MILSNVFMGS CFCVVDSIRS TIAVLAGGDD LCPLFPGSSR FLSPGRNVDV YCPPRKRARV IAPLGFSFRG REEVAAEKQQ PRSIDTLPDE CLFEILRRLP
101: GEKERSSCAC VSKRWLMLLI SIRSSELAAR MKTTDESVKT RMPDLSKGVC AEEKECENNG YLTRRLDAEE ATDIRLASIA FGSCSRGGLG RLFIRGSNST
201: RVTDVGLSAI AHGCPSLRVL SLWKVPLITD AGLSEIADGC PLLEKIDLCQ CPQISDKGLI AVAQKCPNLT SLTIESCSSI HNEGLQAIGR CCPNLKSVTV
301: KDCMRVGDQG IASLVSSASS SLQRIKLQTL NISDLVLAVI GHYGKNVIDL ALIDLQKVNE KGFWVMGKTL GLQRLRSISI TSCSGLTDLG LQAISKGSPS
401: LKQLFICKSE YLSDAGLRAF AETARALENL HLEDCNQVTL VGVSSLLKCN PELKSLALAR CLGIKDITLC PTQMPSCVSL RSLTIHDCPG VTDASLQTVG
501: KICPQLQNVD LSGQIGVTDA SLIPLIGNSK GGFVEVNLSN CVNVTDVLVA MLVKSHGGTL KVFNLDGCKQ ITDRSLLAIA DGCSELDNLD LSSCSISDYG
601: VAVLASARQL NLRILSLASC SKVTQKSLPF LGNMGSSMVG LNLQHCRLIS TYGIGLLEEK LWWCDILS

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.