CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94933
EES03178
EES04173
OQU90496

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25490.1	EER94933	AT2G27050.1	14675533
AT2G25490.1	OQU90496	AT2G27050.1	14675533
AT2G25490.1	EER94933	AT3G20770.1	14675532
AT2G25490.1	OQU90496	AT3G20770.1	14675532
AT2G25490.1	EER94933	AT3G20770.1	14675533
AT2G25490.1	OQU90496	AT3G20770.1	14675533
AT2G25490.1	EES03178	AT3G28715.1	21798944
AT2G25490.1	EES04173	AT4G02570.1	14675533
AT5G25350.1	EER94933	AT3G20770.1	14675532
AT5G25350.1	OQU90496	AT3G20770.1	14675532
AT5G25350.1	EER94933	AT3G20770.1	14675533
AT5G25350.1	OQU90496	AT3G20770.1	14675533
AT5G25350.1	EES04173	AT4G02570.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G090240.1	Barley	cytosol	69.17	80.33
Zm00001d000408_P001	Maize	cytosol	94.25	79.41
Zm00001d036880_P003	Maize	cytosol	93.29	79.35
TraesCS7B01G278800.1	Wheat	cytosol	78.75	76.2
TraesCS7D01G373800.1	Wheat	cytosol	78.91	75.88
Os06t0605900-01	Rice	cytosol	75.88	75.76
TraesCS7A01G377500.1	Wheat	cytosol	78.27	75.5
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	31.31	73.68
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	71.89	68.7
HORVU5Hr1G029670.1	Barley	mitochondrion	52.56	64.13
HORVU5Hr1G000950.4	Barley	plastid	42.97	60.18
GSMUA_Achr6P05220_001	Banana	cytosol	53.35	51.07
GSMUA_Achr4P30680_001	Banana	cytosol	51.28	49.23
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	51.92	48.65
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	50.64	48.47
PGSC0003DMT400007545	Potato	cytosol	47.92	47.1
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	48.24	47.04
KRH03688	Soybean	cytosol	47.76	46.79
VIT_11s0016g05410.t01	Wine grape	cytosol	49.36	46.61
KRH20255	Soybean	cytosol	47.44	46.48
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	47.44	46.33
Solyc12g009560.1.1	Tomato	cytosol	47.12	46.31
KRH15886	Soybean	cytosol	47.44	46.12
KRH62989	Soybean	cytosol	47.44	45.69
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	48.56	45.51
Bra036542.1-P	Field mustard	cytosol	44.73	45.45
VIT_04s0008g05470.t01	Wine grape	cytosol	48.24	45.28
KRH05167	Soybean	cytosol	43.93	45.08
Solyc08g060810.2.1	Tomato	plastid	47.76	44.96
AT5G25350.1	Thale cress	cytosol	44.73	44.94
PGSC0003DMT400040977	Potato	nucleus	47.92	44.84
CDX87090	Canola	cytosol	44.09	44.81
CDY19807	Canola	cytosol	43.77	44.48
KRH52439	Soybean	cytosol, nucleus, peroxisome	45.21	44.36
KRH61771	Soybean	cytosol	45.05	44.34
CDX88173	Canola	cytosol	43.93	44.21
CDY35358	Canola	cytosol	43.93	44.14
CDX80503	Canola	cytosol	43.77	44.12
AT2G25490.1	Thale cress	plastid	44.25	44.11
Bra009835.1-P	Field mustard	cytosol	43.77	44.05
Bra034254.1-P	Field mustard	cytosol	43.61	43.89
KRH04870	Soybean	cytosol	18.85	43.38
CDX76980	Canola	cytosol	41.37	43.24
PGSC0003DMT400094835	Potato	cytosol	16.61	42.45
PGSC0003DMT400089433	Potato	mitochondrion	30.99	42.27
PGSC0003DMT400042949	Potato	cytosol	35.62	40.4
Solyc06g049010.1.1	Tomato	plastid	37.86	38.23
Solyc06g030620.1.1	Tomato	cytosol	11.66	36.32
Solyc06g030610.1.1	Tomato	cytosol	15.81	36.13
EES04933	Sorghum	cytosol	14.54	26.07
EES08900	Sorghum	cytosol	24.92	24.57
KXG30697	Sorghum	cytosol	16.13	23.93
EES18256	Sorghum	cytosol, nucleus, plastid	12.78	21.68
KXG23663	Sorghum	cytosol	22.68	21.45
EES03986	Sorghum	cytosol	12.78	21.0
EES07863	Sorghum	nucleus	23.0	20.84
EES09509	Sorghum	cytosol	12.78	20.73
KXG22793	Sorghum	nucleus	22.36	20.11
OQU89081	Sorghum	cytosol	16.77	20.0
KXG29052	Sorghum	plastid	21.09	20.0
KXG26667	Sorghum	plastid	14.86	19.87

Protein Annotations

MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	UniProt:C5Z5P5	ncoils:Coil	EnsemblPlants:EER90022
ProteinID:EER90022	ProteinID:EER90022.2	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF13516
PANTHER:PTHR44327	PANTHER:PTHR44327:SF3	SMART:SM00367	EnsemblPlantsGene:SORBI_3010G186200	SUPFAM:SSF52047	SUPFAM:SSF81383
unigene:Sbi.2118	UniParc:UPI0007F30CB4	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:52679609..52682635

Molecular Weight (calculated)

65772.0 Da

IEP (calculated)

7.460

GRAVY (calculated)

0.221

Length

626 amino acids

Sequence
(BLAST)

001: MSSFQGYRGD AVLAGVRSRK RVFATAAAEP VTAAAPKRQK RRDEPSLDAL PDECLFEVLR RVQGARARCA SACVSRRWLA LLAGIRASEA VLAPAAPAVP
101: DLNQEYLSED DEADLMDLDG DVRERTLEGK EATDARLTAA AVAGRLAAVS VRGSHPARGV TDAGVSALAR GCPELRSLAL WDVPQVTDAG LAEIAAECHS
201: LERLDITGCP MITDKGLIAV AQGCPELKSL TIEACSGVAN EGLKAIGRCC AKLQAVSIKN CAHVDDQGVS GLVCSATASL AKVRLQGLNI TDASLAVIGY
301: YGKAIKDLTL ARLPAVGERG FWVMANALGL QKLRCMTVIS CPGLTDLALA SVAKFSPSLK LVNLKKCSKV SDGCLKDFAE SSKVLENLQI EECSKVTLMG
401: ILAFLPNCSP KFKALSLSKC IGIKDICSAP AQLPVCKSLR SLTIKDCPGF TDASLAVVGM ICPQLENVNL SGLGAVTDNG FLPLLKSSES GLVNVDLNGC
501: ENLTDAAVSA LVKAHGASLA HLSLEGCSKI TDASLFAISE SCSQLAELDL SNCMVSDYGV AVLAAAKQLK LRILSLSGCM KVTQKSVPFL GSMSSSLEGL
601: NLQFNFIGNR NIASLEKQLW RCDILA

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.