Factsheet for VIT_11s0016g05410.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007545	Potato	cytosol	70.14	73.0
Solyc12g009560.1.1	Tomato	cytosol	69.83	72.68
KRH03688	Soybean	cytosol	68.17	70.74
KRH20255	Soybean	cytosol	68.02	70.58
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	66.21	68.38
KRH62989	Soybean	cytosol	66.97	68.31
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	65.01	67.24
VIT_04s0008g05470.t01	Wine grape	cytosol	67.27	66.87
KRH04870	Soybean	cytosol	23.98	58.46
GSMUA_Achr6P05220_001	Banana	cytosol	55.51	56.27
GSMUA_Achr4P30680_001	Banana	cytosol	55.2	56.13
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	55.2	55.96
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	54.3	53.89
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	21.42	53.38
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	53.54	53.14
HORVU7Hr1G090240.1	Barley	cytosol	41.78	51.39
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	50.08	50.69
Zm00001d015778_P001	Maize	cytosol	49.02	50.54
Zm00001d053642_P001	Maize	cytosol	49.47	50.38
TraesCS6D01G169200.1	Wheat	cytosol	49.02	50.08
TraesCS6A01G181900.1	Wheat	cytosol	48.87	49.92
TraesCS6B01G210700.1	Wheat	cytosol	48.87	49.92
EER90022	Sorghum	cytosol, plastid	46.61	49.36
HORVU6Hr1G038430.3	Barley	plastid	48.42	49.16
TraesCS7B01G278800.1	Wheat	cytosol	47.96	49.15
TraesCS7A01G377500.1	Wheat	cytosol	47.96	49.0
Os02t0200900-01	Rice	cytosol	48.57	48.79
TraesCS7D01G373800.1	Wheat	cytosol	47.81	48.69
Os06t0605900-01	Rice	cytosol	45.25	47.85
HORVU5Hr1G029670.1	Barley	mitochondrion	33.18	42.88
HORVU5Hr1G000950.4	Barley	plastid	28.81	42.73
Zm00001d036880_P003	Maize	cytosol	45.7	41.17
Zm00001d000408_P001	Maize	cytosol	45.25	40.38
VIT_10s0071g00310.t01	Wine grape	cytosol	15.54	24.94
VIT_08s0007g07030.t01	Wine grape	cytosol	12.67	24.0
VIT_14s0060g01970.t01	Wine grape	cytosol, plastid	23.08	23.79
VIT_05s0020g02400.t01	Wine grape	cytosol	21.72	23.57
VIT_18s0001g09940.t01	Wine grape	plastid	18.55	22.74
VIT_08s0058g00700.t01	Wine grape	cytosol	22.32	22.32
VIT_07s0129g01110.t01	Wine grape	plastid	17.8	20.96
VIT_18s0001g15010.t01	Wine grape	mitochondrion	13.12	20.33
VIT_06s0004g07520.t01	Wine grape	cytosol	20.06	20.09
VIT_18s0072g00820.t01	Wine grape	cytosol, extracellular, peroxisome	14.78	18.22

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100267990	wikigene:100267990	MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10
EMBL:AM477122	ProteinID:CAN83761	ProteinID:CAN83761.1	ProteinID:CCB51591	ProteinID:CCB51591.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	UniProt:F6HH95	EMBL:FN595756	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	EntrezGene:LOC100267990	wikigene:LOC100267990	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44327	PANTHER:PTHR44327:SF1
SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	TIGR:TC57390	TIGR:TC62362
UniParc:UPI00021087AE	ArrayExpress:VIT_11s0016g05410	EnsemblPlantsGene:VIT_11s0016g05410	EnsemblPlants:VIT_11s0016g05410.t01	unigene:Vvi.1771	RefSeq:XP_002285249
RefSeq:XP_002285249.1	RefSeq:XP_002285249.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:+:4745581..4749038

Molecular Weight (calculated)

70617.4 Da

IEP (calculated)

6.980

GRAVY (calculated)

0.170

Length

663 amino acids

Sequence
(BLAST)

001: MPMSTLVNYS GDDDFYPGGS FYINPMDSGL LVSIGSCMDV YCPPRKRSRI TAPYIFRENN LELEKRPSID VLPDECLFEI LRRLPGGQER SSCARVSKRW
101: LMLLSSIRRT EICPRKSSQS LNESSKLDKE LTIPVPDDIE MISAEDRELG SDGYLTRCLE GKKATDISLA AIAVGTSSRG GLGKLSIRES SSSRGVTNLG
201: LSKIAHGCPS LRVLSLWNVS AVGDEGLFEI GNGCHMLEKL DLCQCPLISD KGLIAIAKNC PNLTALTIES CANIGNESLQ AIGSLCPKLQ SISIKDCPLV
301: GDQGVAGLLS SATSILSRVK LQSLNITDFS LAVVGHYGKA ITSLTLSGLQ NVSEKGFWVM GNAMGLQTLI SLTITSCRGI TDVSLEAMGK GCPNLKQMCL
401: RKCCFVSDNG LIAFAKAAGS LEGLQLEECN RVTQLGVIGS LSNCGSKLKS LSLVKCMGIK DIAVGTPMLS PCHSLRSLSI RNCPGFGSAS LAMVGKLCPQ
501: LHHVDLSGLD GMTDAGLLPL LESCEAGLAK VNLSGCLNLT DEVVLAMARL HGETLELLNL DGCRKITDAS LVAIADNCLL LNDLDLSKCA ITDSGIAALS
601: CGEKLNLQIL SVSGCSKVSN KSMPSLCKLG KTLLGLNLQH CNKISSSSVE LLMESLWRCD ILF

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.