Factsheet for HORVU6Hr1G038430.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G050990.2
HORVU3Hr1G098530.4
HORVU4Hr1G051680.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25490.1	HORVU4Hr1G051680.1	AT2G27050.1	14675533
AT2G25490.1	HORVU4Hr1G051680.1	AT3G20770.1	14675532
AT2G25490.1	HORVU4Hr1G051680.1	AT3G20770.1	14675533
AT2G25490.1	HORVU3Hr1G050990.2	AT3G28715.1	21798944
AT2G25490.1	HORVU3Hr1G098530.4	AT4G02570.1	14675533
AT5G25350.1	HORVU4Hr1G051680.1	AT3G20770.1	14675532
AT5G25350.1	HORVU4Hr1G051680.1	AT3G20770.1	14675533
AT5G25350.1	HORVU3Hr1G098530.4	AT4G02570.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G210700.1	Wheat	cytosol	95.56	96.15
TraesCS6D01G169200.1	Wheat	cytosol	94.79	95.38
TraesCS6A01G181900.1	Wheat	cytosol	94.33	94.92
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	84.53	84.27
Zm00001d015778_P001	Maize	cytosol	81.32	82.58
Zm00001d053642_P001	Maize	cytosol	81.93	82.18
Os02t0200900-01	Rice	cytosol	81.62	80.76
HORVU7Hr1G090240.1	Barley	cytosol	59.88	72.54
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	28.48	69.92
HORVU5Hr1G029670.1	Barley	mitochondrion	45.18	57.5
HORVU5Hr1G000950.4	Barley	plastid	37.37	54.59
GSMUA_Achr6P05220_001	Banana	cytosol	52.53	52.45
GSMUA_Achr4P30680_001	Banana	cytosol	52.07	52.15
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	50.84	50.76
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	51.91	50.75
KRH03688	Soybean	cytosol	48.09	49.14
KRH20255	Soybean	cytosol	47.93	48.98
PGSC0003DMT400007545	Potato	cytosol	47.63	48.82
VIT_11s0016g05410.t01	Wine grape	cytosol	49.16	48.42
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	47.47	48.29
Solyc12g009560.1.1	Tomato	cytosol	47.01	48.19
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	47.01	47.89
KRH15886	Soybean	cytosol	47.17	47.83
VIT_04s0008g05470.t01	Wine grape	cytosol	48.55	47.53
PGSC0003DMT400040977	Potato	nucleus	48.55	47.38
KRH62989	Soybean	cytosol	47.01	47.23
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	48.24	47.16
Bra036542.1-P	Field mustard	cytosol	44.41	47.08
KRH05167	Soybean	cytosol	43.95	47.05
CDY19807	Canola	cytosol	44.26	46.92
Solyc08g060810.2.1	Tomato	plastid	47.63	46.77
CDX87090	Canola	cytosol	44.1	46.75
AT5G25350.1	Thale cress	cytosol	44.41	46.55
CDX88173	Canola	cytosol	44.1	46.3
CDX80503	Canola	cytosol	43.95	46.22
Bra009835.1-P	Field mustard	cytosol	43.8	45.98
Bra034254.1-P	Field mustard	cytosol	43.8	45.98
CDX76980	Canola	cytosol	42.11	45.91
AT2G25490.1	Thale cress	plastid	44.1	45.86
KRH61771	Soybean	cytosol	44.41	45.6
CDY35358	Canola	cytosol	43.49	45.59
KRH52439	Soybean	cytosol, nucleus, peroxisome	44.41	45.45
PGSC0003DMT400094835	Potato	cytosol	16.08	42.86
KRH04870	Soybean	cytosol	17.61	42.28
PGSC0003DMT400042949	Potato	cytosol	35.53	42.03
PGSC0003DMT400089433	Potato	mitochondrion	29.4	41.83
Solyc06g049010.1.1	Tomato	plastid	39.2	41.29
Solyc06g030610.1.1	Tomato	cytosol	16.23	38.69
Solyc06g030620.1.1	Tomato	cytosol	11.79	38.31
HORVU6Hr1G059950.1	Barley	cytosol	15.77	24.7
HORVU3Hr1G012530.12	Barley	cytosol	12.71	23.65
HORVU4Hr1G014630.1	Barley	cytosol	13.17	22.28
HORVU1Hr1G065030.2	Barley	cytosol	11.94	20.58
HORVU0Hr1G005070.1	Barley	plastid	17.3	20.25
HORVU5Hr1G047420.2	Barley	cytosol, mitochondrion, plastid	20.83	20.15
HORVU5Hr1G050420.1	Barley	plastid	17.0	20.11
HORVU5Hr1G024060.1	Barley	cytosol, plastid	23.43	18.15
HORVU3Hr1G091200.4	Barley	cytosol	11.64	18.1

Protein Annotations

EnsemblPlants:HORVU6Hr1G038430.3	EnsemblPlantsGene:HORVU6Hr1G038430	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR44327	PANTHER:PTHR44327:SF3	PFAM:PF13516	SEG:seg	SMART:SM00367	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI000B47947D	UniProt:A0A287TYX4	MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	:

Description

No Description!

Coordinates

chrchr6H:+:195455195..195458148

Molecular Weight (calculated)

68455.5 Da

IEP (calculated)

7.088

GRAVY (calculated)

0.297

Length

653 amino acids

Sequence
(BLAST)

001: CVSLMVCSSI ASDGGCLVSA PAELSGMFCR GGGPVVQQRK RSLVAASAVA AAAAECMRAS KKQRQPPQPS LDGLPDECLF EVLRRLPGGR ERADSACVSR
101: RWLALLASIR VSELGHAALA APSLPDLNEE FVMEEGTDDS PADPCVERVL EGNEATDVRL AAMAVVAGSR RGLEKLAIRG SHPTRGVTDQ GLLAVARGSP
201: NLCSLALWDV PLVTDAGLAE IAAGCPSLER LDITSCPLIT DKGLAAIAQG CPNLVSLTIE ACSGVGNEGL RAIGRCCLKL QAVSIKNCMH VGDQGISSLV
301: CSASASLTKI RLQGLNITDA SLAVIGYYGK AVTELTLARL SAVGERGFWV MANAAGLQKL RCMSVTSCLG VTDLAITCIA KFCPGLKQLC LRKCGHVSDA
401: GLKAFTESAK VLENLQLEEC NRVTLVGVLA CLINCSQKFR ALSLVKCTGV RDVCSAPAQL PVCKSLRFLT IKDCAGFTDA SLAVVGMICP QLEQVDLSGL
501: GEITDNGLLP LIKSSEGSLV KVDLSGCKNI TDVTVSSLVK AHGKSVKQVS LEGCSKITDA SLFCISENCT ELAELDLSNC MVSDSGVASL ASAKHFKLRV
601: LSLFGCSNVT QASVQFLGSM GKLEGLNLQY CNMIGNHNIA SLEKQLWWCD IVA

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.