Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009835.1-P | Field mustard | cytosol | 99.04 | 99.04 |
| CDX80503 | Canola | cytosol | 96.14 | 96.3 |
| AT5G25350.1 | Thale cress | cytosol | 86.98 | 86.84 |
| CDX87090 | Canola | cytosol | 83.6 | 84.42 |
| CDY19807 | Canola | cytosol | 82.48 | 83.28 |
| CDX76980 | Canola | cytosol | 56.11 | 58.26 |
| CDY35358 | Canola | cytosol | 57.56 | 57.46 |
| KRH15886 | Soybean | cytosol | 59.0 | 56.99 |
| VIT_04s0008g05470.t01 | Wine grape | cytosol | 59.16 | 55.17 |
| KRH05167 | Soybean | cytosol | 53.54 | 54.59 |
| KRH61771 | Soybean | cytosol | 54.66 | 53.46 |
| PGSC0003DMT400040977 | Potato | nucleus | 56.91 | 52.91 |
| KRH52439 | Soybean | cytosol, nucleus, peroxisome | 54.18 | 52.82 |
| Solyc08g060810.2.1 | Tomato | plastid | 55.95 | 52.33 |
| GSMUA_Achr4P30680_001 | Banana | cytosol | 49.04 | 46.78 |
| PGSC0003DMT400089433 | Potato | mitochondrion | 34.41 | 46.62 |
| GSMUA_Achr6P05220_001 | Banana | cytosol | 48.71 | 46.33 |
| GSMUA_Achr9P28510_001 | Banana | cytosol, nucleus, peroxisome | 48.23 | 45.87 |
| PGSC0003DMT400094835 | Potato | cytosol | 18.01 | 45.71 |
| PGSC0003DMT400042949 | Potato | cytosol | 40.35 | 45.47 |
| Solyc06g049010.1.1 | Tomato | plastid | 44.86 | 45.0 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 48.23 | 44.91 |
| Zm00001d053642_P001 | Maize | cytosol | 46.78 | 44.7 |
| EES06473 | Sorghum | cytosol, peroxisome, plasma membrane | 46.95 | 44.58 |
| TraesCS6D01G169200.1 | Wheat | cytosol | 46.46 | 44.53 |
| TraesCS6A01G181900.1 | Wheat | cytosol | 46.3 | 44.38 |
| HORVU7Hr1G090240.1 | Barley | cytosol | 38.42 | 44.34 |
| TraesCS6B01G210700.1 | Wheat | cytosol | 46.14 | 44.22 |
| HORVU6Hr1G038430.3 | Barley | plastid | 46.3 | 44.1 |
| Os02t0200900-01 | Rice | cytosol | 46.78 | 44.09 |
| Zm00001d015778_P001 | Maize | cytosol | 45.5 | 44.01 |
| HORVU1Hr1G089690.1 | Barley | cytosol, extracellular, mitochondrion | 18.81 | 43.98 |
| EER90022 | Sorghum | cytosol, plastid | 44.21 | 43.93 |
| TraesCS7B01G278800.1 | Wheat | cytosol | 44.53 | 42.81 |
| GSMUA_Achr2P15920_001 | Banana | cytosol, peroxisome, plastid | 45.82 | 42.66 |
| TraesCS7D01G373800.1 | Wheat | cytosol | 44.37 | 42.4 |
| TraesCS7A01G377500.1 | Wheat | cytosol | 44.21 | 42.37 |
| Os06t0605900-01 | Rice | cytosol | 41.96 | 41.63 |
| Solyc06g030610.1.1 | Tomato | cytosol | 18.01 | 40.88 |
| Solyc06g030620.1.1 | Tomato | cytosol | 12.38 | 38.31 |
| Zm00001d036880_P003 | Maize | cytosol | 44.53 | 37.64 |
| Zm00001d000408_P001 | Maize | cytosol | 44.05 | 36.88 |
| HORVU5Hr1G029670.1 | Barley | mitochondrion | 29.74 | 36.06 |
| HORVU5Hr1G000950.4 | Barley | plastid | 25.72 | 35.79 |
| CDX88014 | Canola | cytosol | 16.4 | 25.19 |
| CDX88336 | Canola | cytosol | 12.86 | 24.69 |
| CDY09760 | Canola | cytosol | 24.44 | 24.24 |
| CDY46953 | Canola | cytosol | 15.92 | 24.09 |
| CDX90588 | Canola | cytosol | 24.28 | 24.01 |
| CDX68067 | Canola | cytosol | 13.83 | 23.96 |
| CDY40798 | Canola | cytosol | 15.76 | 23.84 |
| CDX87549 | Canola | cytosol | 13.5 | 23.66 |
| CDX79184 | Canola | cytosol | 13.5 | 23.4 |
| CDX83114 | Canola | cytosol | 18.65 | 23.34 |
| CDX71945 | Canola | cytosol | 13.18 | 23.23 |
| CDX96592 | Canola | cytosol | 13.5 | 23.2 |
| CDY06032 | Canola | cytosol | 13.02 | 22.95 |
| CDY67973 | Canola | plasma membrane | 13.34 | 22.93 |
| CDY58589 | Canola | extracellular | 4.82 | 22.9 |
| CDY58588 | Canola | extracellular | 4.82 | 22.73 |
| CDX68575 | Canola | cytosol | 18.33 | 22.31 |
| CDY25663 | Canola | plastid | 18.01 | 21.79 |
| CDY11182 | Canola | cytosol, endoplasmic reticulum, nucleus | 23.47 | 21.6 |
| CDY43846 | Canola | plastid | 17.85 | 21.6 |
| CDY19741 | Canola | cytosol | 21.22 | 21.39 |
| CDY18646 | Canola | cytosol | 17.85 | 21.18 |
| CDX81326 | Canola | cytosol | 17.85 | 21.18 |
| CDX80753 | Canola | endoplasmic reticulum | 22.83 | 21.01 |
| CDY53337 | Canola | cytosol | 21.54 | 20.97 |
| CDY28039 | Canola | cytosol | 13.02 | 20.77 |
| CDY35942 | Canola | cytosol | 13.02 | 20.51 |
| CDX88253 | Canola | cytosol | 20.74 | 20.16 |
| CDX80608 | Canola | cytosol | 20.58 | 20.0 |
| CDY45764 | Canola | cytosol, peroxisome, plastid | 16.4 | 17.5 |
| CDY29091 | Canola | plastid | 4.02 | 14.45 |
| CDY12824 | Canola | nucleus | 18.17 | 10.37 |
| CDY01426 | Canola | cytosol | 18.01 | 10.34 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:11.5.2.6 | MapMan:19.2.2.8.1.4.2 | Gene3D:3.80.10.10 | EnsemblPlants:CDX88173 | ProteinID:CDX88173 |
| ProteinID:CDX88173.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:GSBRNA2T00147630001 | InterPro:IPR001611 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt |
| InterPro:Leu-rich_rpt_Cys-con_subtyp | PFAM:PF00646 | PFAM:PF13516 | PANTHER:PTHR44327 | PANTHER:PTHR44327:SF1 | SMART:SM00367 |
| SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0004EDB855 | SEG:seg | : | : |
Description
BnaA06g27640D
Coordinates
chrLK031854:-:1111819..1114494
Molecular Weight (calculated)
65362.0 Da
IEP (calculated)
8.076
GRAVY (calculated)
0.147
Length
622 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGIFRVSGD DEFFTGGGGS SMHLSPGSCP GVYLPARKRL RVTAAATSFY SSFEEKQASI QVLPDECLFE ILRRLPSSGR ERSACACVSK HWLSVLSSIT
101: RDESVEEVES EGFLSRSLEG NKATDLRLAA ISVGTSARGG LGKLQIRGSG FESKVTDAGL GAVARGCASL KVLSLWNLPA VSDVGVSEIA RSCPMIEKLD
201: LSRCPGITDK GLVAIAENCK NLSELTIDSC SGVGNEGLRA VARGCGNLRS ISIKSCPRIG DQGVSFLLAQ AGSYLTKVKL QMVNVTGLSL AVLGHYGAAV
301: TDLVLHGLQG VNEKGFWVMG NAKGMKKLKS LSVTACRGMT DVGLEAVGNG CTDLKHVSLN KCLLVSGKGL VALAKSASSL ESLKLEECHR INQFGFLGFL
401: MNCGVKLKSF SLTNCLGISE APLPSSSTSC SSLRSLSIRH CPGFGDASLS FLGKLCHQLQ DIELCGLNGV TDAGVFELVQ SNSVGLVKVN LSGCINVSDN
501: TVSAVSVCHG RTLESLNVDG CKNITDASLV AVAKNCYSVN DLDVSNTLVS DQGVKALASS PNHLNLQVLS IGGCSGVTDK SKACIQKLGR TLLGLNIQRC
601: GRISSSTVDN LLEHLWRCDI LY
101: RDESVEEVES EGFLSRSLEG NKATDLRLAA ISVGTSARGG LGKLQIRGSG FESKVTDAGL GAVARGCASL KVLSLWNLPA VSDVGVSEIA RSCPMIEKLD
201: LSRCPGITDK GLVAIAENCK NLSELTIDSC SGVGNEGLRA VARGCGNLRS ISIKSCPRIG DQGVSFLLAQ AGSYLTKVKL QMVNVTGLSL AVLGHYGAAV
301: TDLVLHGLQG VNEKGFWVMG NAKGMKKLKS LSVTACRGMT DVGLEAVGNG CTDLKHVSLN KCLLVSGKGL VALAKSASSL ESLKLEECHR INQFGFLGFL
401: MNCGVKLKSF SLTNCLGISE APLPSSSTSC SSLRSLSIRH CPGFGDASLS FLGKLCHQLQ DIELCGLNGV TDAGVFELVQ SNSVGLVKVN LSGCINVSDN
501: TVSAVSVCHG RTLESLNVDG CKNITDASLV AVAKNCYSVN DLDVSNTLVS DQGVKALASS PNHLNLQVLS IGGCSGVTDK SKACIQKLGR TLLGLNIQRC
601: GRISSSTVDN LLEHLWRCDI LY
001: MSGIFRFSGD EDCLLGGSMY LSPGSCPGVY YPARKRLRVA ATSFYSGFEE KQTSIDVLPE ECLFEILRRL PSGQERSACA CVSKHWLNLL SSISRSEVNE
101: SSVQDVEEGE GFLSRSLEGK KATDLRLAAI AVGTSSRGGL GKLQIRGSGF ESKVTDVGLG AVAHGCPSLR IVSLWNLPAV SDLGLSEIAR SCPMIEKLDL
201: SRCPGITDSG LVAIAENCVN LSDLTIDSCS GVGNEGLRAI ARRCVNLRSI SIRSCPRIGD QGVAFLLAQA GSYLTKVKLQ MLNVSGLSLA VIGHYGAAVT
301: DLVLHGLQGV NEKGFWVMGN AKGLKKLKSL SVMSCRGMTD VGLEAVGNGC PDLKHVSLNK CLLVSGKGLV ALAKSALSLE SLKLEECHRI NQFGLMGFLM
401: NCGSKLKAFS LANCLGISDF NSESSLPSPS CSSLRSLSIR CCPGFGDASL AFLGKFCHQL QDVELCGLNG VTDAGVRELL QSNNVGLVKV NLSECINVSD
501: NTVSAISVCH GRTLESLNLD GCKNITNASL VAVAKNCYSV NDLDISNTLV SDHGIKALAS SPNHLNLQVL SIGGCSSITD KSKACIQKLG RTLLGLNIQR
601: CGRISSSTVD TLLENLWRCD ILY
101: SSVQDVEEGE GFLSRSLEGK KATDLRLAAI AVGTSSRGGL GKLQIRGSGF ESKVTDVGLG AVAHGCPSLR IVSLWNLPAV SDLGLSEIAR SCPMIEKLDL
201: SRCPGITDSG LVAIAENCVN LSDLTIDSCS GVGNEGLRAI ARRCVNLRSI SIRSCPRIGD QGVAFLLAQA GSYLTKVKLQ MLNVSGLSLA VIGHYGAAVT
301: DLVLHGLQGV NEKGFWVMGN AKGLKKLKSL SVMSCRGMTD VGLEAVGNGC PDLKHVSLNK CLLVSGKGLV ALAKSALSLE SLKLEECHRI NQFGLMGFLM
401: NCGSKLKAFS LANCLGISDF NSESSLPSPS CSSLRSLSIR CCPGFGDASL AFLGKFCHQL QDVELCGLNG VTDAGVRELL QSNNVGLVKV NLSECINVSD
501: NTVSAISVCH GRTLESLNLD GCKNITNASL VAVAKNCYSV NDLDISNTLV SDHGIKALAS SPNHLNLQVL SIGGCSSITD KSKACIQKLG RTLLGLNIQR
601: CGRISSSTVD TLLENLWRCD ILY
Arabidopsis Description
EBF2EIN3-binding F-box protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q708Y0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.