CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76980
CDX80503
CDX87090
CDX88173
CDY19807
CDY35358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20770.1	CDX76980	AT2G25490.1	14675532
AT3G20770.1	CDY35358	AT2G25490.1	14675532
AT3G20770.1	CDX76980	AT2G25490.1	14675533
AT3G20770.1	CDY35358	AT2G25490.1	14675533
AT3G20770.1	CDX80503	AT5G25350.1	14675532
AT3G20770.1	CDX87090	AT5G25350.1	14675532
AT3G20770.1	CDX88173	AT5G25350.1	14675532
AT3G20770.1	CDY19807	AT5G25350.1	14675532
AT3G20770.1	CDX80503	AT5G25350.1	14675533
AT3G20770.1	CDX87090	AT5G25350.1	14675533
AT3G20770.1	CDX88173	AT5G25350.1	14675533
AT3G20770.1	CDY19807	AT5G25350.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035746.1-P	Field mustard	nucleus	99.35	93.27
CDY06379	Canola	nucleus	97.61	92.2
CDY60391	Canola	nucleus	72.83	78.82
AT3G20770.1	Thale cress	nucleus	88.91	65.13
CDX82228	Canola	nucleus	75.65	64.33
CDY27563	Canola	nucleus	81.74	64.05
CDY32390	Canola	nucleus	75.43	63.21
CDY38540	Canola	nucleus	60.0	49.02
CDX83250	Canola	nucleus	60.22	48.6
CDY70411	Canola	nucleus	16.74	45.83
KRG89856	Soybean	nucleus	59.78	44.07
KRH18695	Soybean	nucleus	58.91	43.64
CDY46568	Canola	nucleus	15.87	43.45
KRH73465	Soybean	nucleus	56.74	42.51
KRH14682	Soybean	nucleus	56.3	42.46
Solyc06g073720.1.1	Tomato	nucleus	55.43	41.8
KRH18696	Soybean	nucleus	55.65	41.42
PGSC0003DMT400022477	Potato	nucleus	55.22	41.37
PGSC0003DMT400015148	Potato	nucleus	54.13	40.82
Solyc01g009170.2.1	Tomato	nucleus	53.91	40.39
Solyc06g073730.1.1	Tomato	nucleus	52.83	40.17
VIT_06s0009g01380.t01	Wine grape	nucleus	52.17	39.34
PGSC0003DMT400015145	Potato	nucleus	51.09	39.23
GSMUA_Achr6P15930_001	Banana	nucleus	38.91	34.56
GSMUA_Achr10P...	Banana	nucleus	38.26	33.72
CDX81161	Canola	nucleus	13.7	32.81
Os02t0689132-00	Rice	nucleus	11.96	31.07
GSMUA_Achr5P27670_001	Banana	nucleus	42.17	30.94
TraesCS4A01G129400.1	Wheat	nucleus	36.3	30.53
GSMUA_Achr11P...	Banana	nucleus	38.91	30.24
CDY09099	Canola	nucleus	25.43	30.15
TraesCS4B01G175100.1	Wheat	nucleus	42.39	30.0
GSMUA_Achr8P21550_001	Banana	nucleus	41.3	29.97
GSMUA_Achr2P11540_001	Banana	nucleus	39.35	29.97
GSMUA_Achr9P17080_001	Banana	nucleus	40.43	29.9
EER94933	Sorghum	nucleus	41.74	29.86
TraesCS4D01G177000.1	Wheat	nucleus	41.96	29.65
Zm00001d047563_P001	Maize	nucleus	41.3	29.59
HORVU4Hr1G051680.1	Barley	nucleus	41.74	29.49
Zm00001d028974_P001	Maize	nucleus	41.3	29.37
GSMUA_Achr3P09440_001	Banana	nucleus	33.7	29.3
Zm00001d007188_P001	Maize	nucleus	36.96	28.57
OQU90496	Sorghum	nucleus	36.09	27.95
CDY08821	Canola	nucleus	20.43	26.48
TraesCS2A01G099900.1	Wheat	nucleus	35.0	26.05
TraesCS2D01G099400.1	Wheat	nucleus	35.0	25.97
TraesCS2B01G116900.1	Wheat	nucleus	34.57	25.69
CDY14539	Canola	nucleus	20.22	25.0
Zm00001d022530_P001	Maize	nucleus	24.57	24.89
CDY59518	Canola	nucleus	26.3	23.77
CDX92408	Canola	nucleus	25.65	23.65
CDX78369	Canola	nucleus	16.74	23.4
CDY11093	Canola	nucleus	25.43	20.71
CDY40078	Canola	nucleus	20.22	20.53
CDX85778	Canola	nucleus	20.22	20.44
CDY60137	Canola	nucleus	24.78	19.42
CDY47740	Canola	nucleus	24.57	19.42
CDX73009	Canola	nucleus	24.57	19.32

Protein Annotations

MapMan:11.5.2.4	MapMan:15.5.11	UniProt:A0A078G2S3	EnsemblPlants:CDY19606	ProteinID:CDY19606	ProteinID:CDY19606.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00009271001	PFAM:PF04873	PANTHER:PTHR33305	PANTHER:PTHR33305:SF1	UniParc:UPI0004EEF56B
SEG:seg	:	:	:	:	:

Description

BnaA05g20140DBnaA05g20140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2S3]

Coordinates

chrLK032098:+:468082..470824

Molecular Weight (calculated)

52297.2 Da

IEP (calculated)

4.745

GRAVY (calculated)

-0.841

Length

460 amino acids

Sequence
(BLAST)

001: MMFNEMGMCG NMDFFSPASL GEVDFCPAPA HPEPDSVVED DYTDDEIDVD ELERRMWRDK MRLKRLKEQD KSGSKEGVDA AKQRQSQEQA RRKKMSRAQD
101: GILKYMLKMM EVCKAQGFVY GIIPENGKPV TGASDNLREW WKDKVRFDRN GPAAISKYQA ENNIPGVREG SNPIGPTPHT ELYPESCPPV SLSGGGSCSL
201: LMNDCSQYDV DGLEKETHYE VEELKPEKEE VPSEFMRKRK PSRELNTMMD RTIFTCENTG CAHGDVSRGF LDRNSRDNHQ FVCPHRDSGL PYGAPSRFHV
301: SEPIDLTGIG VPEDGQKMIS ELMSMYDRNV QSNQNQTSMV METQLLQPTV QNHQEHLQFQ GNMVEGSFFE DLNIPNRVNH QMFFQGNNNN SGFKYDAAHT
401: NNNNFEAAHN NGSSNRFQLV FDSPPFDMAS FDYRDDMSMP GVVGTMDGMQ QKQQDVSIWF

Best Arabidopsis Sequence Match ( AT1G73730.1 )
(BLAST)

001: MGDLAMSVAD IRMENEPDDL ASDNVAEIDV SDEEIDADDL ERRMWKDRVR LKRIKERQKA GSQGAQTKET PKKISDQAQR KKMSRAQDGI LKYMLKLMEV
101: CKVRGFVYGI IPEKGKPVSG SSDNIRAWWK EKVKFDKNGP AAIAKYEEEC LAFGKSDGNR NSQFVLQDLQ DATLGSLLSS LMQHCDPPQR KYPLEKGTPP
201: PWWPTGNEEW WVKLGLPKSQ SPPYRKPHDL KKMWKVGVLT AVINHMLPDI AKIKRHVRQS KCLQDKMTAK ESAIWLAVLN QEESLIQQPS SDNGNSNVTE
301: THRRGNNADR RKPVVNSDSD YDVDGTEEAS GSVSSKDSRR NQIQKEQPTA ISHSVRDQDK AEKHRRRKRP RIRSGTVNRQ EEEQPEAQQR NILPDMNHVD
401: APLLEYNING THQEDDVVDP NIALGPEDNG LELVVPEFNN NYTYLPLVNE QTMMPVDERP MLYGPNPNQE LQFGSGYNFY NPSAVFVHNQ EDDILHTQIE
501: MNTQAPPHNS GFEEAPGGVL QPLGLLGNED GVTGSELPQY QSGILSPLTD LDFDYGGFGD DFSWFGA

Arabidopsis Description

EIL3SLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.