CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY10506
CDY42408

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73730.1	CDY10506	AT1G56160.1	18218967
AT1G73730.1	CDY42408	AT1G56160.1	18218967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60137	Canola	nucleus	96.58	96.25
AT1G73730.1	Thale cress	nucleus	83.25	85.89
CDY11093	Canola	nucleus	82.91	85.84
CDY47740	Canola	nucleus	80.34	80.76
HORVU0Hr1G011440.1	Barley	nucleus	45.64	68.99
VIT_06s0004g01610.t01	Wine grape	nucleus	56.07	52.65
KRH23176	Soybean	nucleus	53.16	52.62
KRH10163	Soybean	nucleus	52.48	52.03
Solyc01g014480.2.1	Tomato	nucleus	51.11	44.3
PGSC0003DMT400076890	Potato	nucleus	51.11	44.17
CDX81161	Canola	nucleus	14.19	43.23
PGSC0003DMT400055102	Potato	nucleus	49.06	42.96
Solyc01g006650.1.1	Tomato	nucleus	48.38	42.88
TraesCS5D01G273600.1	Wheat	nucleus	44.27	42.32
Os09t0490200-01	Rice	nucleus	43.93	42.06
GSMUA_Achr9P27680_001	Banana	nucleus	43.76	41.97
Zm00001d020939_P001	Maize	nucleus	43.42	41.71
EER99089	Sorghum	nucleus	42.91	41.22
GSMUA_Achr8P25580_001	Banana	nucleus	43.25	41.07
GSMUA_Achr3P11160_001	Banana	nucleus	40.0	40.98
TraesCS5B01G265400.1	Wheat	nucleus	40.68	40.89
TraesCS5A01G265700.1	Wheat	nucleus	40.68	40.82
TraesCS7A01G246100.1	Wheat	nucleus	40.34	38.44
TraesCS7D01G244600.1	Wheat	nucleus	40.34	38.44
OQU80929	Sorghum	nucleus	40.51	38.35
TraesCS7B01G145400.1	Wheat	nucleus	40.17	38.34
CDX82228	Canola	nucleus	35.21	38.08
Os08t0508700-01	Rice	nucleus	40.17	37.96
CDY32390	Canola	nucleus	35.04	37.34
Zm00001d031445_P001	Maize	nucleus	39.83	36.87
CDY38540	Canola	nucleus	35.38	36.77
CDX83250	Canola	nucleus	35.56	36.49
CDY27563	Canola	nucleus	35.56	35.43
CDY70411	Canola	nucleus	9.74	33.93
CDX85778	Canola	nucleus	25.98	33.41
CDY40078	Canola	nucleus	25.81	33.33
CDY46568	Canola	nucleus	9.23	32.14
CDX92408	Canola	nucleus	26.32	30.86
CDY59518	Canola	nucleus	26.5	30.45
CDX78369	Canola	nucleus	15.04	26.75
CDY60391	Canola	nucleus	18.46	25.41
CDY06379	Canola	nucleus	20.51	24.64
CDY19606	Canola	nucleus	19.32	24.57
CDY09099	Canola	nucleus	15.56	23.45
CDY14539	Canola	nucleus	13.5	21.24
CDY08821	Canola	nucleus	12.82	21.13

Protein Annotations

Gene3D:1.10.3180.10	MapMan:11.5.2.4	MapMan:15.5.11	GO:A0A078C9Z1	EnsemblPlants:CDX73009	ProteinID:CDX73009
ProteinID:CDX73009.1	ncoils:Coil	InterPro:Ethylene_insens-like_DNA-bd	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00103449001	InterPro:IPR023278	PFAM:PF04873	PANTHER:PTHR33305
PANTHER:PTHR33305:SF21	SUPFAM:SSF116768	UniParc:UPI0004EB3E05	SEG:seg	:	:

Description

BnaC06g34570D

Coordinates

chrLK031797:-:1645677..1648346

Molecular Weight (calculated)

65730.7 Da

IEP (calculated)

5.003

GRAVY (calculated)

-0.869

Length

585 amino acids

Sequence
(BLAST)

001: MGGGDLALSV ADIRMENEQP DDLASDTVAE IDVSDEEIDA EDLERRMWKD RVRLKRIKER QKGDSQGPQA KEPPKKISDQ AQRKKMSRAQ DGILKYMLKL
101: MEVCKVRGFV YGIIPEKGKP VSGSSDNIRA WWKEKVKFDK NGPAAIAKYE EECLAFGKSD GNRNSQFVLQ DLQDATLGSL LSSLMQHCDP PQRKYPLEKG
201: TPPPWWPTGK EEWWVKLGLP QSQSPPYRKP HDLKKMWKVG VLTAVINHMS PDIAKIKRHV RQSKCLQDKM TAKESAIWLA VLNQEESLIQ QPSSDNGTSN
301: VTETHRRGNN ADRRKTVINS DSDYDVDGTE EASGSVSSKD SRRNQVPAAT SQQPVRDQDK AGKHKRRKRP RIRSGTLNVQ DEEQVEAEGR NVLPDMNHVE
401: APMLDYNING TTNHHEEGVL EPNISLGPEE NGLELVVPEF DSNYTYLPPV DGQAMMPVDE RPMLYGANPN QELQFGSGYN YYNTSAVFVH NQEEDLIHTQ
501: IEMNSQAPPH SNGFDGQGGV LQPHGNEEVG VAGRDMPPQF QSDQDKLLDS NILSPFNDLP FDSSTFYSGF DSFGAFDDDY SWFGA

Best Arabidopsis Sequence Match ( AT1G73730.1 )
(BLAST)

001: MGDLAMSVAD IRMENEPDDL ASDNVAEIDV SDEEIDADDL ERRMWKDRVR LKRIKERQKA GSQGAQTKET PKKISDQAQR KKMSRAQDGI LKYMLKLMEV
101: CKVRGFVYGI IPEKGKPVSG SSDNIRAWWK EKVKFDKNGP AAIAKYEEEC LAFGKSDGNR NSQFVLQDLQ DATLGSLLSS LMQHCDPPQR KYPLEKGTPP
201: PWWPTGNEEW WVKLGLPKSQ SPPYRKPHDL KKMWKVGVLT AVINHMLPDI AKIKRHVRQS KCLQDKMTAK ESAIWLAVLN QEESLIQQPS SDNGNSNVTE
301: THRRGNNADR RKPVVNSDSD YDVDGTEEAS GSVSSKDSRR NQIQKEQPTA ISHSVRDQDK AEKHRRRKRP RIRSGTVNRQ EEEQPEAQQR NILPDMNHVD
401: APLLEYNING THQEDDVVDP NIALGPEDNG LELVVPEFNN NYTYLPLVNE QTMMPVDERP MLYGPNPNQE LQFGSGYNFY NPSAVFVHNQ EDDILHTQIE
501: MNTQAPPHNS GFEEAPGGVL QPLGLLGNED GVTGSELPQY QSGILSPLTD LDFDYGGFGD DFSWFGA

Arabidopsis Description

EIL3SLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.