CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46568	Canola	nucleus	94.64	94.64
CDX81161	Canola	nucleus	23.81	20.83
CDY60391	Canola	nucleus	44.05	17.41
CDY09099	Canola	nucleus	39.29	17.01
CDY19606	Canola	nucleus	45.83	16.74
CDY06379	Canola	nucleus	47.02	16.22
CDX82228	Canola	nucleus	44.64	13.86
CDY38540	Canola	nucleus	45.83	13.68
CDY32390	Canola	nucleus	44.64	13.66
CDY27563	Canola	nucleus	47.02	13.46
CDX83250	Canola	nucleus	44.64	13.16
CDX92408	Canola	nucleus	38.69	13.03
CDY59518	Canola	nucleus	39.29	12.97
CDY08821	Canola	nucleus	26.79	12.68
CDY14539	Canola	nucleus	27.98	12.63
CDX78369	Canola	nucleus	23.81	12.16
CDY11093	Canola	nucleus	34.52	10.27
CDX73009	Canola	nucleus	33.93	9.74
CDY47740	Canola	nucleus	33.33	9.62
CDX85778	Canola	nucleus	25.6	9.45
CDY60137	Canola	nucleus	32.74	9.37
CDY40078	Canola	nucleus	25.0	9.27

Protein Annotations

MapMan:11.5.2.4	UniProt:A0A078JY69	EnsemblPlants:CDY70411	ProteinID:CDY70411	ProteinID:CDY70411.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00003173001	PFAM:PF04873	PANTHER:PTHR33305	PANTHER:PTHR33305:SF1	UniParc:UPI0004EF1F56	SEG:seg

Description

BnaCnng68230DBnaCnng68230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JY69]

Coordinates

chrLK042021:-:651..1748

Molecular Weight (calculated)

19818.5 Da

IEP (calculated)

6.516

GRAVY (calculated)

-0.973

Length

168 amino acids

Sequence
(BLAST)

001: MRSNMGLFFS QPQPIIDDDG HTDDEFDVDK LEKRIWRQGM RLKRLKERRK NKERDDEQLI SKCMFKMMEV CNAQGFVYGI IPENGKPIIS ASHNLQEWWK
101: DKVRFDLNGP IAIAKHQESN NMVCESNEEE AQNHQEHWHF GRSEGNIVER SSVEDLMKLS INNNKRTV

Best Arabidopsis Sequence Match ( AT2G27050.1 )
(BLAST)

001: MMMFNEMGMY GNMDFFSSST SLDVCPLPQA EQEPVVEDVD YTDDEMDVDE LEKRMWRDKM RLKRLKEQQS KCKEGVDGSK QRQSQEQARR KKMSRAQDGI
101: LKYMLKMMEV CKAQGFVYGI IPEKGKPVTG ASDNLREWWK DKVRFDRNGP AAIAKYQSEN NISGGSNDCN SLVGPTPHTL QELQDTTLGS LLSALMQHCD
201: PPQRRFPLEK GVSPPWWPNG NEEWWPQLGL PNEQGPPPYK KPHDLKKAWK VGVLTAVIKH MSPDIAKIRK LVRQSKCLQD KMTAKESATW LAIINQEEVV
301: ARELYPESCP PLSSSSSLGS GSLLINDCSE YDVEGFEKEQ HGFDVEERKP EIVMMHPLAS FGVAKMQHFP IKEEVATTVN LEFTRKRKQN NDMNVMVMDR
401: SAGYTCENGQ CPHSKMNLGF QDRSSRDNHQ MVCPYRDNRL AYGASKFHMG GMKLVVPQQP VQPIDLSGVG VPENGQKMIT ELMAMYDRNV QSNQTPPTLM
501: ENQSMVIDAK AAQNQQLNFN SGNQMFMQQG TNNGVNNRFQ MVFDSTPFDM AAFDYRDDWQ TGAMEGMGKQ QQQQQQQQDV SIWF

Arabidopsis Description

EIL1ETHYLENE INSENSITIVE 3-like 1 protein [Source:UniProtKB/Swiss-Prot;Acc:Q9SLH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.