CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY10506
CDY42408

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73730.1	CDY10506	AT1G56160.1	18218967
AT1G73730.1	CDY42408	AT1G56160.1	18218967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003831.1-P	Field mustard	nucleus	94.34	96.56
CDX73009	Canola	nucleus	85.84	82.91
CDY60137	Canola	nucleus	85.84	82.62
AT1G73730.1	Thale cress	nucleus	82.3	82.01
CDY47740	Canola	nucleus	78.41	76.12
HORVU0Hr1G011440.1	Barley	nucleus	43.36	63.31
VIT_06s0004g01610.t01	Wine grape	nucleus	55.4	50.24
KRH23176	Soybean	nucleus	51.33	49.07
KRH10163	Soybean	nucleus	50.62	48.47
Solyc01g014480.2.1	Tomato	nucleus	49.38	41.33
PGSC0003DMT400076890	Potato	nucleus	49.38	41.21
PGSC0003DMT400055102	Potato	nucleus	47.79	40.42
Solyc01g006650.1.1	Tomato	nucleus	47.08	40.3
Os09t0490200-01	Rice	nucleus	42.65	39.44
GSMUA_Achr9P27680_001	Banana	nucleus	42.48	39.34
GSMUA_Achr3P11160_001	Banana	nucleus	39.47	39.05
TraesCS5D01G273600.1	Wheat	nucleus	42.12	38.89
GSMUA_Achr8P25580_001	Banana	nucleus	42.12	38.64
Zm00001d020939_P001	Maize	nucleus	41.59	38.59
TraesCS5A01G265700.1	Wheat	nucleus	39.47	38.25
EER99089	Sorghum	nucleus	41.06	38.1
TraesCS5B01G265400.1	Wheat	nucleus	39.12	37.97
CDX81161	Canola	nucleus	12.57	36.98
CDX82228	Canola	nucleus	34.87	36.41
Os08t0508700-01	Rice	nucleus	39.65	36.19
TraesCS7D01G244600.1	Wheat	nucleus	39.29	36.16
TraesCS7A01G246100.1	Wheat	nucleus	39.12	35.99
TraesCS7B01G145400.1	Wheat	nucleus	38.94	35.89
CDY32390	Canola	nucleus	34.87	35.88
OQU80929	Sorghum	nucleus	38.76	35.44
CDY38540	Canola	nucleus	34.69	34.81
CDX83250	Canola	nucleus	34.87	34.56
CDY70411	Canola	nucleus	10.27	34.52
CDY27563	Canola	nucleus	35.4	34.07
Zm00001d031445_P001	Maize	nucleus	37.7	33.7
CDY46568	Canola	nucleus	9.73	32.74
CDX85778	Canola	nucleus	24.6	30.55
CDY40078	Canola	nucleus	24.42	30.46
CDX92408	Canola	nucleus	25.84	29.26
CDY59518	Canola	nucleus	25.84	28.68
CDY60391	Canola	nucleus	19.82	26.35
CDY06379	Canola	nucleus	21.95	25.46
CDY19606	Canola	nucleus	20.71	25.43
CDY09099	Canola	nucleus	16.28	23.71
CDX78369	Canola	nucleus	13.63	23.4
CDY14539	Canola	nucleus	14.69	22.31
CDY08821	Canola	nucleus	13.63	21.69

Protein Annotations

Gene3D:1.10.3180.10	MapMan:11.5.2.4	MapMan:15.5.11	GO:A0A078FGC5	UniProt:A0A078FGC5	EnsemblPlants:CDY11093
ProteinID:CDY11093	ProteinID:CDY11093.1	ncoils:Coil	InterPro:Ethylene_insens-like_DNA-bd	GO:GO:0003674	GO:GO:0003700
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00049063001	InterPro:IPR023278
PFAM:PF04873	PANTHER:PTHR33305	PANTHER:PTHR33305:SF21	SUPFAM:SSF116768	UniParc:UPI0004EEDF00	SEG:seg

Description

BnaC06g23450DBnaC06g23450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGC5]

Coordinates

chrLK032009:+:225854..227960

Molecular Weight (calculated)

63900.6 Da

IEP (calculated)

5.064

GRAVY (calculated)

-0.889

Length

565 amino acids

Sequence
(BLAST)

001: MGGGDLPISV TDIRMENEPG DDNVAEIDVS DEEIDAEDLE RRMWKDRVRL KRIKERTKID SSQAKETPKK VSEQAQRKKM SRAQDGILKY MLKLMEVCKV
101: RGFVYGIIPE KGKPVSGSSD NIRAWWKEKV KFDKNGPAAI AKYEEECLAF GKSDGDRNSQ FVLQDLQDAT LGSLLSSLMQ HCDPPQRKYP LEKGTPPPWW
201: PSGDEEWWVK LGLAKGQSPP YKKPHDLKKM WKVGVLTAVI NHMSPDIAKI KRHSAIWLAV LNQEESLIPQ PSSDNGASNV TETHRRGNNA ERRRTVINSD
301: SDYDVDGREE ASGSVSSKDN RRKQTQKEQP AATSQTVRDQ DKSEKHRRRK RPRRTVTQQE EEQPETEQRI VLPDMNHVDA PLLEYNINGT THHQEEGVLE
401: PNIALGPEEN SLEMVIPEFD NNYTYLPPVS GQAMIPVEER PMLYGPNTNQ ELQFGSGYNF YNPSAVFVHN QEEDLIHTQI EMNPQAPPHN GGFEAPGGVL
501: QPHNLLGNED SVTGRDLPPQ FQSDQDKLLD SNILSPFSDL AFDSNTFYSG FDSYGVDDHL SWFGA

Best Arabidopsis Sequence Match ( AT1G73730.1 )
(BLAST)

001: MGDLAMSVAD IRMENEPDDL ASDNVAEIDV SDEEIDADDL ERRMWKDRVR LKRIKERQKA GSQGAQTKET PKKISDQAQR KKMSRAQDGI LKYMLKLMEV
101: CKVRGFVYGI IPEKGKPVSG SSDNIRAWWK EKVKFDKNGP AAIAKYEEEC LAFGKSDGNR NSQFVLQDLQ DATLGSLLSS LMQHCDPPQR KYPLEKGTPP
201: PWWPTGNEEW WVKLGLPKSQ SPPYRKPHDL KKMWKVGVLT AVINHMLPDI AKIKRHVRQS KCLQDKMTAK ESAIWLAVLN QEESLIQQPS SDNGNSNVTE
301: THRRGNNADR RKPVVNSDSD YDVDGTEEAS GSVSSKDSRR NQIQKEQPTA ISHSVRDQDK AEKHRRRKRP RIRSGTVNRQ EEEQPEAQQR NILPDMNHVD
401: APLLEYNING THQEDDVVDP NIALGPEDNG LELVVPEFNN NYTYLPLVNE QTMMPVDERP MLYGPNPNQE LQFGSGYNFY NPSAVFVHNQ EDDILHTQIE
501: MNTQAPPHNS GFEEAPGGVL QPLGLLGNED GVTGSELPQY QSGILSPLTD LDFDYGGFGD DFSWFGA

Arabidopsis Description

EIL3SLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.