Factsheet for VIT_06s0004g01610.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0085g00050.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73730.1	VIT_19s0085g00050.t01	AT1G56160.1	18218967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G011440.1	Barley	nucleus	48.96	78.81
KRH10163	Soybean	nucleus	61.8	65.25
KRH23176	Soybean	nucleus	61.64	64.97
AT1G73730.1	Thale cress	nucleus	52.81	58.02
Bra008110.1-P	Field mustard	nucleus	49.12	56.77
Bra015970.1-P	Field mustard	nucleus	52.97	56.22
CDX73009	Canola	nucleus	52.65	56.07
CDY60137	Canola	nucleus	52.81	56.05
Bra003831.1-P	Field mustard	nucleus	49.12	55.43
CDY11093	Canola	nucleus	50.24	55.4
Solyc01g014480.2.1	Tomato	nucleus	57.78	53.33
PGSC0003DMT400076890	Potato	nucleus	57.78	53.18
CDY47740	Canola	nucleus	49.12	52.58
PGSC0003DMT400055102	Potato	nucleus	54.41	50.75
Solyc01g006650.1.1	Tomato	nucleus	53.45	50.45
Os09t0490200-01	Rice	nucleus	43.66	44.52
GSMUA_Achr9P27680_001	Banana	nucleus	43.18	44.1
TraesCS5D01G273600.1	Wheat	nucleus	43.18	43.95
Zm00001d020939_P001	Maize	nucleus	42.7	43.68
GSMUA_Achr8P25580_001	Banana	nucleus	43.02	43.51
GSMUA_Achr3P11160_001	Banana	nucleus	39.81	43.43
EER99089	Sorghum	nucleus	42.22	43.19
TraesCS5A01G265700.1	Wheat	nucleus	39.65	42.37
TraesCS5B01G265400.1	Wheat	nucleus	39.33	42.1
Os08t0508700-01	Rice	nucleus	41.09	41.36
TraesCS7D01G244600.1	Wheat	nucleus	40.45	41.04
TraesCS7B01G145400.1	Wheat	nucleus	40.29	40.95
TraesCS7A01G246100.1	Wheat	nucleus	40.13	40.72
OQU80929	Sorghum	nucleus	40.29	40.61
VIT_13s0047g00250.t01	Wine grape	nucleus	38.68	39.12
Zm00001d031445_P001	Maize	nucleus	39.17	38.61
VIT_06s0009g01380.t01	Wine grape	nucleus	37.4	38.2
VIT_00s0357g00120.t01	Wine grape	nucleus	28.09	36.16

Protein Annotations

Gene3D:1.10.3180.10	EntrezGene:100248434	wikigene:100248434	MapMan:11.5.2.4	MapMan:15.5.11	ProteinID:CCB43741
ProteinID:CCB43741.1	ncoils:Coil	InterPro:Ethylene_insens-like_DNA-bd	UniProt:F6GU99	EMBL:FN594951	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009873	GO:GO:0009987
GO:GO:0071281	InterPro:IPR023278	EntrezGene:LOC100248434	wikigene:LOC100248434	PFAM:PF04873	PANTHER:PTHR33305
PANTHER:PTHR33305:SF21	SUPFAM:SSF116768	UniParc:UPI0002108664	ArrayExpress:VIT_06s0004g01610	EnsemblPlantsGene:VIT_06s0004g01610	EnsemblPlants:VIT_06s0004g01610.t01
RefSeq:XP_002285571	RefSeq:XP_002285571.1	RefSeq:XP_019076321.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:2026185..2029687

Molecular Weight (calculated)

70261.2 Da

IEP (calculated)

5.842

GRAVY (calculated)

-0.933

Length

623 amino acids

Sequence
(BLAST)

001: MGEFEEIGVD MCMLGDSSDI EVDEVRCENI AEKDVSDEEI EAEELERRMW KDRIKLKRIK ERQKITAQQA AEKQKPKPNA DHARRKKMSR AQDGILKYML
101: KLMEVCKARG FVYGIIPEKG KPVSGASDNI RAWWKEKVKF DKNGPAAIAK YEAECLAMVE NENNRNGNSQ STLQDLQDAT LGSLLSSLMQ HCDPPQRKYP
201: LEKGVPPPWW PSGNEDWWVK LGLARSQSPP YKKPHDLKKM WKVGVLTAVI KHMSPDISKI RRLVRQSKCL QDKMTAKESS IWLGVLNREE SLIRQPSSDN
301: GTSGITGTPP NGHDGKNKVA VSSDSDYDVD GVDDGVGSVS SKDDRRNQQM DIASFEDDRD NSGAQPVQDK KKGRKQLKRK RPHVKSRPVN QESAPSLEEN
401: LHEESRNSLQ HLHNEPRNSL PDINHNDAQL APYEMLGTQQ ENDRVTSLRP LEKDLENQSQ LPEPEFNHFS AFPSANAIST QSMYVGGRPL LYPAVQNAEL
501: HHGTPYEFYN PPSDYGHNPD GQQSHMAMNE TQMRLEDGRI HEPELNRNGN DISGGNLRHY VKDTFHSGQD RPVESHYGSP IESLSLDFGG FNSPFDLGID
601: GTSLGTPDID YLLDDDLIQY FGA

Best Arabidopsis Sequence Match ( AT1G73730.1 )
(BLAST)

001: MGDLAMSVAD IRMENEPDDL ASDNVAEIDV SDEEIDADDL ERRMWKDRVR LKRIKERQKA GSQGAQTKET PKKISDQAQR KKMSRAQDGI LKYMLKLMEV
101: CKVRGFVYGI IPEKGKPVSG SSDNIRAWWK EKVKFDKNGP AAIAKYEEEC LAFGKSDGNR NSQFVLQDLQ DATLGSLLSS LMQHCDPPQR KYPLEKGTPP
201: PWWPTGNEEW WVKLGLPKSQ SPPYRKPHDL KKMWKVGVLT AVINHMLPDI AKIKRHVRQS KCLQDKMTAK ESAIWLAVLN QEESLIQQPS SDNGNSNVTE
301: THRRGNNADR RKPVVNSDSD YDVDGTEEAS GSVSSKDSRR NQIQKEQPTA ISHSVRDQDK AEKHRRRKRP RIRSGTVNRQ EEEQPEAQQR NILPDMNHVD
401: APLLEYNING THQEDDVVDP NIALGPEDNG LELVVPEFNN NYTYLPLVNE QTMMPVDERP MLYGPNPNQE LQFGSGYNFY NPSAVFVHNQ EDDILHTQIE
501: MNTQAPPHNS GFEEAPGGVL QPLGLLGNED GVTGSELPQY QSGILSPLTD LDFDYGGFGD DFSWFGA

Arabidopsis Description

EIL3SLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.