Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0004g01610.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G56160.1 | VIT_06s0004g01610.t01 | AT1G73730.1 | 18218967 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_05s0049g01010.t01 | Wine grape | nucleus | 24.45 | 61.81 |
| CDX73800 | Canola | nucleus | 19.78 | 60.5 |
| CDY55883 | Canola | nucleus | 34.07 | 59.33 |
| CDY35101 | Canola | nucleus | 33.79 | 59.13 |
| CDX79305 | Canola | nucleus | 37.36 | 55.06 |
| AT1G16490.1 | Thale cress | nucleus | 40.66 | 54.01 |
| CDX88513 | Canola | nucleus | 39.84 | 53.7 |
| CDX87403 | Canola | nucleus | 39.56 | 53.33 |
| Bra035097.1-P | Field mustard | nucleus | 39.29 | 52.96 |
| CDX68004 | Canola | nucleus | 38.74 | 52.81 |
| Bra003619.1-P | Field mustard | nucleus | 38.74 | 52.81 |
| Bra026720.1-P | Field mustard | nucleus | 38.74 | 50.54 |
| Bra026048.1-P | Field mustard | nucleus | 39.29 | 50.53 |
| CDX81764 | Canola | nucleus | 38.46 | 50.18 |
| CDY51002 | Canola | nucleus | 38.46 | 50.18 |
| Solyc10g005550.1.1 | Tomato | nucleus | 31.32 | 46.91 |
| PGSC0003DMT400029235 | Potato | nucleus | 30.77 | 46.86 |
| AT3G12820.1 | Thale cress | nucleus | 29.67 | 45.19 |
| PGSC0003DMT400089342 | Potato | nucleus | 29.67 | 44.81 |
| AT1G79180.2 | Thale cress | nucleus | 39.29 | 43.73 |
| Bra001472.1-P | Field mustard | nucleus | 27.47 | 42.92 |
| CDY24243 | Canola | nucleus | 27.75 | 42.8 |
| CDY00800 | Canola | nucleus | 25.55 | 42.66 |
| CDY43399 | Canola | nucleus | 27.47 | 42.19 |
| Bra039344.1-P | Field mustard | nucleus | 27.47 | 42.19 |
| KRH13720 | Soybean | nucleus | 38.74 | 40.87 |
| CDY10506 | Canola | nucleus | 33.52 | 40.8 |
| CDY42408 | Canola | nucleus | 33.52 | 40.8 |
| Bra030812.1-P | Field mustard | nucleus | 33.52 | 40.8 |
| AT1G56160.1 | Thale cress | nucleus | 32.69 | 40.2 |
| CDY35097 | Canola | nucleus | 14.84 | 39.13 |
| VIT_05s0049g01020.t01 | Wine grape | nucleus | 27.2 | 39.13 |
| KRH43737 | Soybean | nucleus | 40.66 | 38.34 |
| VIT_07s0005g03340.t01 | Wine grape | nucleus | 27.2 | 36.8 |
| VIT_12s0134g00490.t01 | Wine grape | nucleus | 24.18 | 34.92 |
| VIT_12s0134g00480.t01 | Wine grape | nucleus | 23.35 | 33.07 |
| VIT_00s0203g00170.t01 | Wine grape | nucleus | 21.15 | 28.73 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100246160 | wikigene:100246160 | MapMan:15.5.2.1 | ProteinID:CBI24203 | ProteinID:CBI24203.3 |
| UniProt:D7T0Y3 | EMBL:FN595503 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| EntrezGene:LOC100246160 | wikigene:LOC100246160 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF883 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0001BE27A0 | ArrayExpress:VIT_19s0085g00050 |
| EnsemblPlantsGene:VIT_19s0085g00050 | EnsemblPlants:VIT_19s0085g00050.t01 | RefSeq:XP_002265973 | RefSeq:XP_002265973.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr19:+:22358835..22361459
Molecular Weight (calculated)
41334.2 Da
IEP (calculated)
4.996
GRAVY (calculated)
-0.727
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRAPCCD KSKVKRGPWS PAEDMRLVSF IQKNGHENWR SLPKQAGLLR CGKSCRLRWI NYLRPDVKRG NFSKEEEDAI IKLHQTLGNK WSKIASHFPG
101: RTDNEIKNVW NTHLKKRLVA QKNDKLYSSS SNTNPISNSP NPSPSTNNEP KEPSSSSTNS SPNIETQVDS IIFDFVGTYG MLDEVNKPGE ELEIPLETDT
201: SFWEMLDSLG SFQYNNEVEG SQSSIIIADH EQGNDNGDAA HESRSWLRYI ENELGLEETS DETMETCTKI QLNGDEQPAS EIISFLEDDG GKLEDNPSII
301: ILISSNLWYD DDPFVYLKIN LLNFMKLESG LVKFSTYHHR TIQFCDTQFL SVPTLGKNER IKVY
101: RTDNEIKNVW NTHLKKRLVA QKNDKLYSSS SNTNPISNSP NPSPSTNNEP KEPSSSSTNS SPNIETQVDS IIFDFVGTYG MLDEVNKPGE ELEIPLETDT
201: SFWEMLDSLG SFQYNNEVEG SQSSIIIADH EQGNDNGDAA HESRSWLRYI ENELGLEETS DETMETCTKI QLNGDEQPAS EIISFLEDDG GKLEDNPSII
301: ILISSNLWYD DDPFVYLKIN LLNFMKLESG LVKFSTYHHR TIQFCDTQFL SVPTLGKNER IKVY
001: MGKGRAPCCD KTKVKRGPWS HDEDLKLISF IHKNGHENWR SLPKQAGLLR CGKSCRLRWI NYLRPDVKRG NFSAEEEDTI IKLHQSFGNK WSKIASKLPG
101: RTDNEIKNVW HTHLKKRLSS ETNLNADEAG SKGSLNEEEN SQESSPNASM SFAGSNISSK DDDAQISQMF EHILTYSEFT GMLQEVDKPE LLEMPFDLDP
201: DIWSFIDGSD SFQQPENRAL QESEEDEVDK WFKHLESELG LEENDNQQQQ QQHKQGTEDE HSSSLLESYE LLIH
101: RTDNEIKNVW HTHLKKRLSS ETNLNADEAG SKGSLNEEEN SQESSPNASM SFAGSNISSK DDDAQISQMF EHILTYSEFT GMLQEVDKPE LLEMPFDLDP
201: DIWSFIDGSD SFQQPENRAL QESEEDEVDK WFKHLESELG LEENDNQQQQ QQHKQGTEDE HSSSLLESYE LLIH
Arabidopsis Description
MYB58Transcription factor MYB58 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.