Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026720.1-P | Field mustard | nucleus | 80.66 | 79.21 |
| CDX81764 | Canola | nucleus | 80.29 | 78.85 |
| CDY51002 | Canola | nucleus | 80.29 | 78.85 |
| CDY55883 | Canola | nucleus | 57.3 | 75.12 |
| CDY35101 | Canola | nucleus | 56.93 | 75.0 |
| Bra026048.1-P | Field mustard | nucleus | 75.91 | 73.5 |
| AT1G79180.2 | Thale cress | nucleus | 69.34 | 58.1 |
| PGSC0003DMT400029235 | Potato | nucleus | 42.34 | 48.54 |
| PGSC0003DMT400089342 | Potato | nucleus | 42.34 | 48.13 |
| Solyc10g005550.1.1 | Tomato | nucleus | 42.34 | 47.74 |
| AT3G12820.1 | Thale cress | nucleus | 39.05 | 44.77 |
| CDY35097 | Canola | nucleus | 20.8 | 41.3 |
| VIT_19s0085g00050.t01 | Wine grape | nucleus | 54.01 | 40.66 |
| AT1G56160.1 | Thale cress | nucleus | 43.8 | 40.54 |
| AT1G06180.1 | Thale cress | nucleus | 36.13 | 40.24 |
| AT2G31180.1 | Thale cress | nucleus | 36.13 | 39.76 |
| KRH13720 | Soybean | nucleus | 48.54 | 38.55 |
| KRH43737 | Soybean | nucleus | 51.82 | 36.79 |
| AT3G23250.1 | Thale cress | nucleus | 37.96 | 36.49 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:838219 | ProteinID:AAD34700.1 | EMBL:AB493459 | ProteinID:AEE29461.1 |
| EMBL:AF062893 | ArrayExpress:AT1G16490 | EnsemblPlantsGene:AT1G16490 | RefSeq:AT1G16490 | TAIR:AT1G16490 | RefSeq:AT1G16490-TAIR-G |
| EnsemblPlants:AT1G16490.1 | TAIR:AT1G16490.1 | Symbol:ATMYB58 | EMBL:AY085461 | Unigene:At.11321 | ncoils:Coil |
| GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009809 | GO:GO:0009987 | GO:GO:0019748 | GO:GO:0030154 |
| GO:GO:0043565 | GO:GO:0044212 | GO:GO:0045893 | GO:GO:2000652 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| InterPro:Myb_dom | RefSeq:NP_173098.1 | PFAM:PF00249 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000272 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0004507 | PO:PO:0005352 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020137 |
| PO:PO:0025022 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF462 | UniProt:Q9SA47 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000009D685 | SEG:seg | : | : |
Description
MYB58Transcription factor MYB58 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA47]
Coordinates
chr1:-:5629655..5631088
Molecular Weight (calculated)
31462.3 Da
IEP (calculated)
4.877
GRAVY (calculated)
-1.010
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKGRAPCCD KTKVKRGPWS HDEDLKLISF IHKNGHENWR SLPKQAGLLR CGKSCRLRWI NYLRPDVKRG NFSAEEEDTI IKLHQSFGNK WSKIASKLPG
101: RTDNEIKNVW HTHLKKRLSS ETNLNADEAG SKGSLNEEEN SQESSPNASM SFAGSNISSK DDDAQISQMF EHILTYSEFT GMLQEVDKPE LLEMPFDLDP
201: DIWSFIDGSD SFQQPENRAL QESEEDEVDK WFKHLESELG LEENDNQQQQ QQHKQGTEDE HSSSLLESYE LLIH
101: RTDNEIKNVW HTHLKKRLSS ETNLNADEAG SKGSLNEEEN SQESSPNASM SFAGSNISSK DDDAQISQMF EHILTYSEFT GMLQEVDKPE LLEMPFDLDP
201: DIWSFIDGSD SFQQPENRAL QESEEDEVDK WFKHLESELG LEENDNQQQQ QQHKQGTEDE HSSSLLESYE LLIH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.