Factsheet for AT1G56160.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030812.1-P	Field mustard	nucleus	73.65	72.91
CDY10506	Canola	nucleus	73.31	72.58
CDY42408	Canola	nucleus	73.31	72.58
AT3G12820.1	Thale cress	nucleus	39.19	48.54
PGSC0003DMT400089342	Potato	nucleus	37.5	46.06
PGSC0003DMT400029235	Potato	nucleus	36.82	45.61
Solyc10g005550.1.1	Tomato	nucleus	37.16	45.27
AT1G16490.1	Thale cress	nucleus	40.54	43.8
AT1G06180.1	Thale cress	nucleus	32.43	39.02
AT2G31180.1	Thale cress	nucleus	32.09	38.15
AT1G79180.2	Thale cress	nucleus	39.53	35.78
AT3G23250.1	Thale cress	nucleus	33.45	34.74
KRH13720	Soybean	nucleus	38.85	33.33
KRH43737	Soybean	nucleus	42.91	32.9
VIT_19s0085g00050.t01	Wine grape	nucleus	40.2	32.69

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:842069	UniProt:A0A178W4I7	ProteinID:AAF02833.1	ProteinID:AAG50903.1
ProteinID:AEE33352.1	EMBL:AF062905	ArrayExpress:AT1G56160	EnsemblPlantsGene:AT1G56160	RefSeq:AT1G56160	TAIR:AT1G56160
RefSeq:AT1G56160-TAIR-G	EnsemblPlants:AT1G56160.1	TAIR:AT1G56160.1	Symbol:ATMYB72	Unigene:At.10919	GO:GO:0000981
GO:GO:0001135	GO:GO:0002237	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006357	GO:GO:0006950	GO:GO:0006952
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605
GO:GO:0009607	GO:GO:0009719	GO:GO:0009866	GO:GO:0009987	GO:GO:0009991	GO:GO:0010043
GO:GO:0010468	GO:GO:0019748	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	GO:GO:0046686
GO:GO:0051365	GO:GO:0055065	GO:GO:0071281	GO:GO:0071369	GO:GO:0071732	GO:GO:1990359
GO:GO:1990532	GO:GO:1990641	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	RefSeq:NP_176012.1
ProteinID:OAP13387.1	PFAM:PF00249	PO:PO:0007616	PO:PO:0009046	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF883	UniProt:Q9SGU3	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00000A2CFF
SEG:seg	:	:	:	:	:

Description

ATMYB72MYB72 [Source:UniProtKB/TrEMBL;Acc:A0A178W4I7]

Coordinates

chr1:+:21022384..21023587

Molecular Weight (calculated)

34108.3 Da

IEP (calculated)

5.919

GRAVY (calculated)

-0.935

Length

296 amino acids

Sequence
(BLAST)

001: MGKGRAPCCD KNKVKRGPWS PQEDLTLITF IQKHGHQNWR SLPKLAGLLR CGKSCRLRWI NYLRPDVKRG NFSKKEEDAI IHYHQTLGNK WSKIASFLPG
101: RTDNEIKNVW NTHLKKRLTP SSSSSSLSST HDQSTKADHD KNCDGAQEEI HSGLNESQNS ATSSHHQGEC MHTKPELHEV NGLNEIQFLL DHDDFDDITS
201: EFLQDNDILF PLDSLLHNHQ THISTQEMTR EVTKSQSFDH PQPDIPCGFE DTNEESDLRR QLVESTTPNN EYDEWFNFID NQTYFDDFNF VGEVCL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.