Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400055102 | |
| PGSC0003DMT400076890 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G56160.1 | PGSC0003DMT400055102 | AT1G73730.1 | 18218967 |
| AT1G56160.1 | PGSC0003DMT400076890 | AT1G73730.1 | 18218967 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73800 | Canola | nucleus | 32.78 | 66.39 |
| PGSC0003DMT400034263 | Potato | mitochondrion | 19.09 | 54.12 |
| Bra001472.1-P | Field mustard | nucleus | 49.38 | 51.07 |
| AT3G12820.1 | Thale cress | nucleus | 50.62 | 51.05 |
| CDY00800 | Canola | nucleus | 46.06 | 50.92 |
| CDY43399 | Canola | nucleus | 48.96 | 49.79 |
| Bra039344.1-P | Field mustard | nucleus | 48.96 | 49.79 |
| CDY24243 | Canola | nucleus | 48.55 | 49.58 |
| PGSC0003DMT400029235 | Potato | nucleus | 48.96 | 49.37 |
| CDY55883 | Canola | nucleus | 39.83 | 45.93 |
| CDY35101 | Canola | nucleus | 39.42 | 45.67 |
| CDX79305 | Canola | nucleus | 45.23 | 44.13 |
| AT1G16490.1 | Thale cress | nucleus | 48.13 | 42.34 |
| CDX81764 | Canola | nucleus | 48.96 | 42.29 |
| PGSC0003DMT400060168 | Potato | nucleus | 38.59 | 42.27 |
| Bra026720.1-P | Field mustard | nucleus | 48.55 | 41.94 |
| CDY51002 | Canola | nucleus | 48.13 | 41.58 |
| CDX88513 | Canola | nucleus | 45.23 | 40.37 |
| CDX68004 | Canola | nucleus | 44.4 | 40.07 |
| Bra003619.1-P | Field mustard | nucleus | 44.4 | 40.07 |
| CDX87403 | Canola | nucleus | 44.81 | 40.0 |
| CDY35097 | Canola | nucleus | 22.82 | 39.86 |
| Bra035097.1-P | Field mustard | nucleus | 44.4 | 39.63 |
| Bra026048.1-P | Field mustard | nucleus | 44.81 | 38.16 |
| AT1G56160.1 | Thale cress | nucleus | 46.06 | 37.5 |
| CDY10506 | Canola | nucleus | 46.06 | 37.12 |
| PGSC0003DMT400051682 | Potato | nucleus | 39.42 | 36.82 |
| CDY42408 | Canola | nucleus | 45.64 | 36.79 |
| Bra030812.1-P | Field mustard | nucleus | 45.64 | 36.79 |
| PGSC0003DMT400097604 | Potato | nucleus | 31.12 | 35.71 |
| PGSC0003DMT400034878 | Potato | nucleus | 36.51 | 34.92 |
| PGSC0003DMT400097096 | Potato | nucleus | 30.71 | 34.74 |
| AT1G79180.2 | Thale cress | nucleus | 46.47 | 34.25 |
| PGSC0003DMT400035748 | Potato | nucleus | 32.37 | 33.77 |
| PGSC0003DMT400042007 | Potato | nucleus | 37.34 | 33.58 |
| PGSC0003DMT400044362 | Potato | nucleus | 37.34 | 33.58 |
| PGSC0003DMT400067318 | Potato | nucleus | 32.37 | 32.1 |
| PGSC0003DMT400051510 | Potato | nucleus | 32.37 | 32.1 |
| PGSC0003DMT400051513 | Potato | nucleus | 32.78 | 31.98 |
| KRH13720 | Soybean | nucleus | 44.81 | 31.3 |
| PGSC0003DMT400067321 | Potato | nucleus | 31.54 | 31.02 |
| PGSC0003DMT400067322 | Potato | nucleus | 31.12 | 30.61 |
| PGSC0003DMT400070912 | Potato | nucleus | 32.78 | 30.38 |
| KRH43737 | Soybean | nucleus | 47.72 | 29.79 |
| VIT_19s0085g00050.t01 | Wine grape | nucleus | 44.81 | 29.67 |
| PGSC0003DMT400093355 | Potato | nucleus | 29.46 | 29.46 |
| PGSC0003DMT400021498 | Potato | nucleus | 28.63 | 28.75 |
| PGSC0003DMT400039029 | Potato | nucleus | 28.63 | 28.4 |
| PGSC0003DMT400086165 | Potato | nucleus | 31.54 | 26.48 |
| PGSC0003DMT400021503 | Potato | nucleus | 18.26 | 22.92 |
| PGSC0003DMT400021501 | Potato | nucleus | 18.26 | 22.34 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102578412 | MapMan:15.5.2.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M1DHZ0 | InterPro:Myb_dom | PFAM:PF00249 |
| EnsemblPlantsGene:PGSC0003DMG400038913 | PGSC:PGSC0003DMG400038913 | EnsemblPlants:PGSC0003DMT400089342 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF883 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000295873D | RefSeq:XP_006346031.1 | SEG:seg |
Description
YUP8H12R.21 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400038913]
Coordinates
chr7:+:56612161..56613114
Molecular Weight (calculated)
27610.6 Da
IEP (calculated)
7.297
GRAVY (calculated)
-0.682
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKGRAACCD KSKVKKGAWS CEEDLRLITF IQKHGHQNWR SLPKQAGLLR CGKSCRLRWI NYLRPDLKRG NFTPQEEDTI IKLHQSFGNK WSKIASHLPG
101: RTDNEIKNVW NTHLKKRRLI HSEAKLDDSS CAYNSPSSTS VLSHANTIIH EKEEAKRSCS SSYNASSSLS NLSQVEIISS PNINHVDMDW IFQFNEEPNN
201: YLELTRVLQD DGIIEIPLEC DHVDIWDMLD IMDPPLQTGH E
101: RTDNEIKNVW NTHLKKRRLI HSEAKLDDSS CAYNSPSSTS VLSHANTIIH EKEEAKRSCS SSYNASSSLS NLSQVEIISS PNINHVDMDW IFQFNEEPNN
201: YLELTRVLQD DGIIEIPLEC DHVDIWDMLD IMDPPLQTGH E
001: MGKGRAPCCD KTKVKRGPWS HDEDLKLISF IHKNGHENWR SLPKQAGLLR CGKSCRLRWI NYLRPDVKRG NFSAEEEDTI IKLHQSFGNK WSKIASKLPG
101: RTDNEIKNVW HTHLKKRLSS ETNLNADEAG SKGSLNEEEN SQESSPNASM SFAGSNISSK DDDAQISQMF EHILTYSEFT GMLQEVDKPE LLEMPFDLDP
201: DIWSFIDGSD SFQQPENRAL QESEEDEVDK WFKHLESELG LEENDNQQQQ QQHKQGTEDE HSSSLLESYE LLIH
101: RTDNEIKNVW HTHLKKRLSS ETNLNADEAG SKGSLNEEEN SQESSPNASM SFAGSNISSK DDDAQISQMF EHILTYSEFT GMLQEVDKPE LLEMPFDLDP
201: DIWSFIDGSD SFQQPENRAL QESEEDEVDK WFKHLESELG LEENDNQQQQ QQHKQGTEDE HSSSLLESYE LLIH
Arabidopsis Description
MYB58Transcription factor MYB58 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.