Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039344.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY24243 | Canola | nucleus | 96.2 | 96.61 |
| CDY00800 | Canola | nucleus | 76.79 | 83.49 |
| CDX73800 | Canola | nucleus | 39.24 | 78.15 |
| CDX73801 | Canola | nucleus | 21.94 | 77.61 |
| AT3G12820.1 | Thale cress | nucleus | 75.11 | 74.48 |
| CDX69310 | Canola | nucleus | 15.19 | 53.73 |
| PGSC0003DMT400089342 | Potato | nucleus | 49.79 | 48.96 |
| PGSC0003DMT400029235 | Potato | nucleus | 42.19 | 41.84 |
| Solyc10g005550.1.1 | Tomato | nucleus | 41.77 | 40.74 |
| CDX79305 | Canola | nucleus | 41.35 | 39.68 |
| CDY35097 | Canola | nucleus | 22.78 | 39.13 |
| CDY10506 | Canola | nucleus | 49.37 | 39.13 |
| CDY42408 | Canola | nucleus | 48.52 | 38.46 |
| CDY35101 | Canola | nucleus | 33.76 | 38.46 |
| CDY55883 | Canola | nucleus | 33.76 | 38.28 |
| CDY15424 | Canola | nucleus | 35.02 | 37.56 |
| CDX88513 | Canola | nucleus | 42.62 | 37.41 |
| CDX87403 | Canola | nucleus | 42.19 | 37.04 |
| CDX81764 | Canola | nucleus | 42.62 | 36.2 |
| CDX68004 | Canola | nucleus | 40.51 | 35.96 |
| CDY35519 | Canola | nucleus | 37.97 | 35.86 |
| CDY10182 | Canola | nucleus | 37.55 | 35.6 |
| CDY51002 | Canola | nucleus | 41.77 | 35.48 |
| CDY47723 | Canola | nucleus | 37.55 | 35.32 |
| CDX92979 | Canola | nucleus | 38.82 | 33.95 |
| CDY57089 | Canola | nucleus | 35.02 | 33.2 |
| CDY70982 | Canola | nucleus | 35.02 | 32.81 |
| CDY08989 | Canola | nucleus | 36.29 | 32.58 |
| CDX84795 | Canola | nucleus | 33.76 | 32.52 |
| CDY23952 | Canola | nucleus | 33.76 | 32.52 |
| CDX77536 | Canola | nucleus | 38.4 | 31.93 |
| CDX85074 | Canola | nucleus | 37.97 | 31.58 |
| KRH13720 | Soybean | nucleus | 43.88 | 30.14 |
| KRH43737 | Soybean | nucleus | 47.68 | 29.27 |
| VIT_19s0085g00050.t01 | Wine grape | nucleus | 42.19 | 27.47 |
| CDY15425 | Canola | nucleus | 1.69 | 3.74 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078I1B4 | UniProt:A0A078I1B4 | EnsemblPlants:CDY43399 | ProteinID:CDY43399 |
| ProteinID:CDY43399.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00076475001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF883 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000253E85A | SEG:seg |
Description
BnaA01g30300DBnaA01g30300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1B4]
Coordinates
chrLK032554:+:238054..239617
Molecular Weight (calculated)
26912.6 Da
IEP (calculated)
7.089
GRAVY (calculated)
-0.816
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKGKAPCCD HSQVLKRGPW SDEESEILKA FILQNGHRNW RSIPKLAGLM RCGKSCRLRW VNYLRPGLKR GNFTKEEEDT IIHLHQTLGN KWSKIASHLG
101: RTDNEIKNVW NTHLKKRSMK SNSSASSDVT NQAPSVSRSS SSSSSSSVSN NVIKSEKLNQ EEELEEILVE DMACGFEVNA PQSLESLFED RKVPPPITKP
201: DSLEIRGKSD DELCRQMVEP GLDDYNEWLN YFDNQTF
101: RTDNEIKNVW NTHLKKRSMK SNSSASSDVT NQAPSVSRSS SSSSSSSVSN NVIKSEKLNQ EEELEEILVE DMACGFEVNA PQSLESLFED RKVPPPITKP
201: DSLEIRGKSD DELCRQMVEP GLDDYNEWLN YFDNQTF
001: MGNRRAPCCD KSQVKRGPWS DEESERLRSF ILKNGHQNWR SLPKLAGLMR CGKSCRLRWI NYLRPGLKRG NFTKEEEDTI IHLHQAYGNK WSKIASNFPG
101: RTDNEIKNVW NTHLKKRLVK RSISSSSSDV TNHSVSSTSS SSSSISSVLQ DVIIKSERPN QEEEFGEILV EQMACGFEVD APQSLECLFD DSQVPPPISK
201: PDSLQTHGKS SDHEFWSRLI EPGFDDYNEW LIFLDNQTC
101: RTDNEIKNVW NTHLKKRLVK RSISSSSSDV TNHSVSSTSS SSSSISSVLQ DVIIKSERPN QEEEFGEILV EQMACGFEVD APQSLECLFD DSQVPPPISK
201: PDSLQTHGKS SDHEFWSRLI EPGFDDYNEW LIFLDNQTC
Arabidopsis Description
AtMYB10Transcription factor MYB10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTV4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.