Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026720.1-P | Field mustard | nucleus | 98.21 | 98.21 |
| CDY51002 | Canola | nucleus | 98.21 | 98.21 |
| CDX69310 | Canola | nucleus | 20.07 | 83.58 |
| AT1G16490.1 | Thale cress | nucleus | 78.85 | 80.29 |
| CDY55883 | Canola | nucleus | 54.84 | 73.21 |
| CDY35101 | Canola | nucleus | 54.12 | 72.6 |
| CDX79305 | Canola | nucleus | 58.78 | 66.4 |
| CDX88513 | Canola | nucleus | 61.65 | 63.7 |
| CDX87403 | Canola | nucleus | 61.29 | 63.33 |
| CDX68004 | Canola | nucleus | 60.57 | 63.3 |
| CDX73800 | Canola | nucleus | 26.52 | 62.18 |
| PGSC0003DMT400089342 | Potato | nucleus | 42.29 | 48.96 |
| PGSC0003DMT400029235 | Potato | nucleus | 41.22 | 48.12 |
| Solyc10g005550.1.1 | Tomato | nucleus | 40.86 | 46.91 |
| CDY00800 | Canola | nucleus | 34.41 | 44.04 |
| CDY24243 | Canola | nucleus | 36.56 | 43.22 |
| CDY15424 | Canola | nucleus | 34.05 | 42.99 |
| CDY43399 | Canola | nucleus | 36.2 | 42.62 |
| CDY35519 | Canola | nucleus | 36.56 | 40.64 |
| CDY35097 | Canola | nucleus | 20.07 | 40.58 |
| CDY57089 | Canola | nucleus | 35.48 | 39.6 |
| CDY10182 | Canola | nucleus | 35.48 | 39.6 |
| CDY10506 | Canola | nucleus | 42.29 | 39.46 |
| CDY42408 | Canola | nucleus | 42.29 | 39.46 |
| CDY23952 | Canola | nucleus | 34.77 | 39.43 |
| CDX84795 | Canola | nucleus | 34.77 | 39.43 |
| CDY47723 | Canola | nucleus | 35.48 | 39.29 |
| CDY08989 | Canola | nucleus | 36.92 | 39.02 |
| KRH13720 | Soybean | nucleus | 47.67 | 38.55 |
| VIT_19s0085g00050.t01 | Wine grape | nucleus | 50.18 | 38.46 |
| CDY70982 | Canola | nucleus | 34.77 | 38.34 |
| CDX92979 | Canola | nucleus | 36.92 | 38.01 |
| CDX85074 | Canola | nucleus | 38.35 | 37.54 |
| CDX77536 | Canola | nucleus | 38.35 | 37.54 |
| KRH43737 | Soybean | nucleus | 51.61 | 37.31 |
| CDX73801 | Canola | nucleus | 4.3 | 17.91 |
| CDY15425 | Canola | nucleus | 3.58 | 9.35 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078D0J5 | UniProt:A0A078D0J5 | EnsemblPlants:CDX81764 | ProteinID:CDX81764 |
| ProteinID:CDX81764.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00136697001 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF462 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EBBDCA |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g38370DBnaC08g38370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078D0J5]
Coordinates
chrLK031826:-:659428..660447
Molecular Weight (calculated)
32185.0 Da
IEP (calculated)
4.627
GRAVY (calculated)
-1.043
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKGRAPCCD KTKVKRGPWS QDEDLKLISF IHKYGHENWR SLPKQAGLLR CGKSCRLRWI NYLRPDLKRG NFTLEEEETI IKLHQSFGNK WSKIASKLPG
101: RTDNEIKNVW HTHLKKRLNS YINHNASDEA ASKGSLNKEE TSQESSPNAS RSFGGSNIVS KEEEDDVQIG ETFEYFQDYS ELAGLLQEVD KPELLEIPFD
201: IDPDVWNFLE GFQQPENSLT PKDHQESEED EVDKWFKNLE SELGLEEDDS QQQQEQNNEA KEDSPSPSLL ESYEVLINH
101: RTDNEIKNVW HTHLKKRLNS YINHNASDEA ASKGSLNKEE TSQESSPNAS RSFGGSNIVS KEEEDDVQIG ETFEYFQDYS ELAGLLQEVD KPELLEIPFD
201: IDPDVWNFLE GFQQPENSLT PKDHQESEED EVDKWFKNLE SELGLEEDDS QQQQEQNNEA KEDSPSPSLL ESYEVLINH
001: MGKGRAPCCD KTKVKRGPWS HDEDLKLISF IHKNGHENWR SLPKQAGLLR CGKSCRLRWI NYLRPDVKRG NFSAEEEDTI IKLHQSFGNK WSKIASKLPG
101: RTDNEIKNVW HTHLKKRLSS ETNLNADEAG SKGSLNEEEN SQESSPNASM SFAGSNISSK DDDAQISQMF EHILTYSEFT GMLQEVDKPE LLEMPFDLDP
201: DIWSFIDGSD SFQQPENRAL QESEEDEVDK WFKHLESELG LEENDNQQQQ QQHKQGTEDE HSSSLLESYE LLIH
101: RTDNEIKNVW HTHLKKRLSS ETNLNADEAG SKGSLNEEEN SQESSPNASM SFAGSNISSK DDDAQISQMF EHILTYSEFT GMLQEVDKPE LLEMPFDLDP
201: DIWSFIDGSD SFQQPENRAL QESEEDEVDK WFKHLESELG LEENDNQQQQ QQHKQGTEDE HSSSLLESYE LLIH
Arabidopsis Description
MYB58Transcription factor MYB58 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.