Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026720.1-P | Field mustard | nucleus | 99.28 | 99.28 |
| CDX81764 | Canola | nucleus | 98.21 | 98.21 |
| CDX69310 | Canola | nucleus | 19.71 | 82.09 |
| AT1G16490.1 | Thale cress | nucleus | 78.85 | 80.29 |
| CDY55883 | Canola | nucleus | 54.84 | 73.21 |
| CDY35101 | Canola | nucleus | 54.12 | 72.6 |
| CDX79305 | Canola | nucleus | 58.78 | 66.4 |
| CDX88513 | Canola | nucleus | 62.01 | 64.07 |
| CDX87403 | Canola | nucleus | 61.65 | 63.7 |
| CDX68004 | Canola | nucleus | 60.93 | 63.67 |
| CDX73800 | Canola | nucleus | 26.16 | 61.34 |
| PGSC0003DMT400089342 | Potato | nucleus | 41.58 | 48.13 |
| PGSC0003DMT400029235 | Potato | nucleus | 40.86 | 47.7 |
| Solyc10g005550.1.1 | Tomato | nucleus | 40.5 | 46.5 |
| CDY00800 | Canola | nucleus | 34.05 | 43.58 |
| CDY15424 | Canola | nucleus | 33.69 | 42.53 |
| CDY24243 | Canola | nucleus | 35.84 | 42.37 |
| CDY43399 | Canola | nucleus | 35.48 | 41.77 |
| CDY35519 | Canola | nucleus | 36.2 | 40.24 |
| CDY35097 | Canola | nucleus | 19.71 | 39.86 |
| CDY10182 | Canola | nucleus | 35.48 | 39.6 |
| CDY10506 | Canola | nucleus | 42.29 | 39.46 |
| CDY42408 | Canola | nucleus | 42.29 | 39.46 |
| CDY47723 | Canola | nucleus | 35.48 | 39.29 |
| CDY57089 | Canola | nucleus | 35.13 | 39.2 |
| CDY23952 | Canola | nucleus | 34.41 | 39.02 |
| CDX84795 | Canola | nucleus | 34.41 | 39.02 |
| CDY08989 | Canola | nucleus | 36.56 | 38.64 |
| KRH13720 | Soybean | nucleus | 47.67 | 38.55 |
| VIT_19s0085g00050.t01 | Wine grape | nucleus | 50.18 | 38.46 |
| CDY70982 | Canola | nucleus | 34.41 | 37.94 |
| CDX92979 | Canola | nucleus | 36.56 | 37.64 |
| CDX85074 | Canola | nucleus | 37.99 | 37.19 |
| CDX77536 | Canola | nucleus | 37.99 | 37.19 |
| KRH43737 | Soybean | nucleus | 50.9 | 36.79 |
| CDX73801 | Canola | nucleus | 4.3 | 17.91 |
| CDY15425 | Canola | nucleus | 3.58 | 9.35 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078IM16 | UniProt:A0A078IM16 | EnsemblPlants:CDY51002 | ProteinID:CDY51002 |
| ProteinID:CDY51002.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00097982001 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF462 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EF3EF6 |
| SEG:seg | : | : | : | : | : |
Description
BnaA09g56310DBnaA09g56310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IM16]
Coordinates
chrLK032955:+:82632..83788
Molecular Weight (calculated)
32240.1 Da
IEP (calculated)
4.677
GRAVY (calculated)
-1.059
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKGRAPFCD KTKVKRGPWS QDEDLKLISF IHKYGHENWR SLPKQAGLLR CGKSCRLRWI NYLRPDLKRG NFTLEEEETI IKLHQSFGNK WSKIASKLPG
101: RTDNEIKNVW HTHLKKRLSS YINHNANDEA ASKGSLNKEE TSQESSPNAS RSFGGSNTVS KEEEDDVQIG ETFEYFQDYS ELAGLLQEVD KPELLEIPFD
201: IDPDVWNFLE GFQQPENSLT PKDHQESEED EVDKWFKNLE SELGLEEDDS QQQQEQHNEA KEDSPSPSLL ESYEVLINH
101: RTDNEIKNVW HTHLKKRLSS YINHNANDEA ASKGSLNKEE TSQESSPNAS RSFGGSNTVS KEEEDDVQIG ETFEYFQDYS ELAGLLQEVD KPELLEIPFD
201: IDPDVWNFLE GFQQPENSLT PKDHQESEED EVDKWFKNLE SELGLEEDDS QQQQEQHNEA KEDSPSPSLL ESYEVLINH
001: MGKGRAPCCD KTKVKRGPWS HDEDLKLISF IHKNGHENWR SLPKQAGLLR CGKSCRLRWI NYLRPDVKRG NFSAEEEDTI IKLHQSFGNK WSKIASKLPG
101: RTDNEIKNVW HTHLKKRLSS ETNLNADEAG SKGSLNEEEN SQESSPNASM SFAGSNISSK DDDAQISQMF EHILTYSEFT GMLQEVDKPE LLEMPFDLDP
201: DIWSFIDGSD SFQQPENRAL QESEEDEVDK WFKHLESELG LEENDNQQQQ QQHKQGTEDE HSSSLLESYE LLIH
101: RTDNEIKNVW HTHLKKRLSS ETNLNADEAG SKGSLNEEEN SQESSPNASM SFAGSNISSK DDDAQISQMF EHILTYSEFT GMLQEVDKPE LLEMPFDLDP
201: DIWSFIDGSD SFQQPENRAL QESEEDEVDK WFKHLESELG LEENDNQQQQ QQHKQGTEDE HSSSLLESYE LLIH
Arabidopsis Description
MYB58Transcription factor MYB58 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.