CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69310	Canola	nucleus	31.09	55.22
Bra001472.1-P	Field mustard	nucleus	89.08	45.49
CDY00800	Canola	nucleus	75.63	41.28
CDY43399	Canola	nucleus	78.15	39.24
CDY24243	Canola	nucleus	76.47	38.56
AT3G12820.1	Thale cress	nucleus	76.47	38.08
PGSC0003DMT400089342	Potato	nucleus	66.39	32.78
CDY35101	Canola	nucleus	55.46	31.73
CDY55883	Canola	nucleus	54.62	31.1
PGSC0003DMT400029235	Potato	nucleus	57.98	28.87
Solyc10g005550.1.1	Tomato	nucleus	57.98	28.4
CDX79305	Canola	nucleus	58.82	28.34
CDY35097	Canola	nucleus	32.77	28.26
CDY15424	Canola	nucleus	52.1	28.05
CDX81764	Canola	nucleus	62.18	26.52
CDX68004	Canola	nucleus	58.82	26.22
CDY51002	Canola	nucleus	61.34	26.16
CDY42408	Canola	nucleus	64.71	25.75
CDY10506	Canola	nucleus	64.71	25.75
CDY10182	Canola	nucleus	53.78	25.6
CDX88513	Canola	nucleus	57.98	25.56
CDY47723	Canola	nucleus	53.78	25.4
CDX87403	Canola	nucleus	57.14	25.19
CDY35519	Canola	nucleus	52.94	25.1
CDY57089	Canola	nucleus	52.1	24.8
CDX84795	Canola	nucleus	51.26	24.8
CDY23952	Canola	nucleus	51.26	24.8
CDX92979	Canola	nucleus	56.3	24.72
CDY70982	Canola	nucleus	52.1	24.51
CDY08989	Canola	nucleus	52.94	23.86
CDX85074	Canola	nucleus	55.46	23.16
CDX77536	Canola	nucleus	55.46	23.16
KRH13720	Soybean	nucleus	60.5	20.87
VIT_19s0085g00050.t01	Wine grape	nucleus	60.5	19.78
KRH43737	Soybean	nucleus	59.66	18.39
CDX73801	Canola	nucleus	3.36	5.97
CDY15425	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:A0A078CAI3	EnsemblPlants:CDX73800	ProteinID:CDX73800	ProteinID:CDX73800.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00111493001	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF883
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EF41F9	:	:

Description

BnaA03g32470D

Coordinates

chrLK031800:+:3686..4913

Molecular Weight (calculated)

13908.8 Da

IEP (calculated)

10.789

GRAVY (calculated)

-0.934

Length

119 amino acids

Sequence
(BLAST)

001: MGKRRTPCCD NSQVLKRGPW SDEESERLKA FILKHGHHNW RSLPKLAGLT RCGKSCRLRW LNYLRPGLKR GSFTKEEEDT IIHLHQVLGN KWSKIASHLQ
101: EEQTTRSRMC GTLISRNDR

Best Arabidopsis Sequence Match ( AT1G56160.1 )
(BLAST)

001: MGKGRAPCCD KNKVKRGPWS PQEDLTLITF IQKHGHQNWR SLPKLAGLLR CGKSCRLRWI NYLRPDVKRG NFSKKEEDAI IHYHQTLGNK WSKIASFLPG
101: RTDNEIKNVW NTHLKKRLTP SSSSSSLSST HDQSTKADHD KNCDGAQEEI HSGLNESQNS ATSSHHQGEC MHTKPELHEV NGLNEIQFLL DHDDFDDITS
201: EFLQDNDILF PLDSLLHNHQ THISTQEMTR EVTKSQSFDH PQPDIPCGFE DTNEESDLRR QLVESTTPNN EYDEWFNFID NQTYFDDFNF VGEVCL

Arabidopsis Description

ATMYB72MYB72 [Source:UniProtKB/TrEMBL;Acc:A0A178W4I7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.