Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87403 | Canola | nucleus | 98.15 | 98.15 |
| Bra035097.1-P | Field mustard | nucleus | 97.78 | 97.78 |
| CDX69310 | Canola | nucleus | 20.0 | 80.6 |
| CDX79305 | Canola | nucleus | 72.59 | 79.35 |
| CDX68004 | Canola | nucleus | 76.3 | 77.15 |
| CDY35101 | Canola | nucleus | 51.85 | 67.31 |
| CDY55883 | Canola | nucleus | 51.85 | 66.99 |
| CDY51002 | Canola | nucleus | 64.07 | 62.01 |
| CDX81764 | Canola | nucleus | 63.7 | 61.65 |
| CDX73800 | Canola | nucleus | 25.56 | 57.98 |
| Solyc10g005550.1.1 | Tomato | nucleus | 42.96 | 47.74 |
| PGSC0003DMT400029235 | Potato | nucleus | 41.85 | 47.28 |
| PGSC0003DMT400089342 | Potato | nucleus | 40.37 | 45.23 |
| CDY15424 | Canola | nucleus | 35.93 | 43.89 |
| CDY00800 | Canola | nucleus | 34.81 | 43.12 |
| CDY24243 | Canola | nucleus | 37.41 | 42.8 |
| CDY43399 | Canola | nucleus | 37.41 | 42.62 |
| CDY35097 | Canola | nucleus | 21.48 | 42.03 |
| CDY23952 | Canola | nucleus | 37.04 | 40.65 |
| CDX84795 | Canola | nucleus | 37.04 | 40.65 |
| CDY10506 | Canola | nucleus | 44.81 | 40.47 |
| CDY42408 | Canola | nucleus | 44.81 | 40.47 |
| CDY10182 | Canola | nucleus | 37.04 | 40.0 |
| KRH13720 | Soybean | nucleus | 51.11 | 40.0 |
| CDY57089 | Canola | nucleus | 37.04 | 40.0 |
| VIT_19s0085g00050.t01 | Wine grape | nucleus | 53.7 | 39.84 |
| CDY47723 | Canola | nucleus | 37.04 | 39.68 |
| CDY35519 | Canola | nucleus | 35.93 | 38.65 |
| CDY70982 | Canola | nucleus | 35.93 | 38.34 |
| KRH43737 | Soybean | nucleus | 53.7 | 37.56 |
| CDY08989 | Canola | nucleus | 36.67 | 37.5 |
| CDX92979 | Canola | nucleus | 36.67 | 36.53 |
| CDX77536 | Canola | nucleus | 38.52 | 36.49 |
| CDX85074 | Canola | nucleus | 38.15 | 36.14 |
| CDX73801 | Canola | nucleus | 3.7 | 14.93 |
| CDY15425 | Canola | nucleus | 4.81 | 12.15 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078DMT1 | EnsemblPlants:CDX88513 | ProteinID:CDX88513 | ProteinID:CDX88513.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00148066001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF462 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE9E68 | SEG:seg |
Description
BnaC06g39570D
Coordinates
chrLK031855:+:1394604..1395644
Molecular Weight (calculated)
30865.8 Da
IEP (calculated)
5.154
GRAVY (calculated)
-1.010
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKGRAPCCD KTKVKRGPWS PEEDLKLISF IQKFGHENWR SLPKQSGLLR CGKSCRLRWI NYLRPDVKRG NFSAEEEEMI IKLHQSYGNK WSKIASKLPG
101: RTDNEIKNVW HTHLKKRLVK SSASPDEPAS PCSSDKTQAE DCLNIKTTHD STTSGSSGGS NNSNQEDDPN MSLMFEYSQF NDIIEEVDKP DLLEIPFDSD
201: LDIWSFLDGP NENSSVSRGE EECDEDEVKK WLKHLENELG LEEDDNHQHH KEGAQDKDSS LLKTYELMIH
101: RTDNEIKNVW HTHLKKRLVK SSASPDEPAS PCSSDKTQAE DCLNIKTTHD STTSGSSGGS NNSNQEDDPN MSLMFEYSQF NDIIEEVDKP DLLEIPFDSD
201: LDIWSFLDGP NENSSVSRGE EECDEDEVKK WLKHLENELG LEEDDNHQHH KEGAQDKDSS LLKTYELMIH
001: MGKGRAPCCD KTKVKRGPWS PEEDIKLISF IQKFGHENWR SLPKQSGLLR CGKSCRLRWI NYLRPDLKRG NFTSEEEETI IKLHHNYGNK WSKIASQLPG
101: RTDNEIKNVW HTHLKKRLAQ SSGTADEPAS PCSSDSVSRG KDDKSSHVED SLNRETNHRN ELSTSMSSGG SNQQDDPKID ELRFEYIEEA YSEFNDIIIQ
201: EVDKPDLLEI PFDSDPDIWS FLDTSNSFQQ STANENSSGS RATTEEESDE DEVKKWFKHL ESELGLEEDD NQQQYKEEES SSSSLLKNYE LMIH
101: RTDNEIKNVW HTHLKKRLAQ SSGTADEPAS PCSSDSVSRG KDDKSSHVED SLNRETNHRN ELSTSMSSGG SNQQDDPKID ELRFEYIEEA YSEFNDIIIQ
201: EVDKPDLLEI PFDSDPDIWS FLDTSNSFQQ STANENSSGS RATTEEESDE DEVKKWFKHL ESELGLEEDD NQQQYKEEES SSSSLLKNYE LMIH
Arabidopsis Description
ATMYB63myb domain protein 63 [Source:TAIR;Acc:AT1G79180]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.