Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47723 | Canola | nucleus | 97.6 | 96.83 |
| Bra015481.1-P | Field mustard | nucleus | 97.2 | 96.43 |
| AT1G06180.1 | Thale cress | nucleus | 75.6 | 76.83 |
| CDY15424 | Canola | nucleus | 56.8 | 64.25 |
| CDY57089 | Canola | nucleus | 62.0 | 62.0 |
| CDY70982 | Canola | nucleus | 60.4 | 59.68 |
| CDX84795 | Canola | nucleus | 58.4 | 59.35 |
| CDY23952 | Canola | nucleus | 57.2 | 58.13 |
| CDX69310 | Canola | nucleus | 14.8 | 55.22 |
| CDX73800 | Canola | nucleus | 25.6 | 53.78 |
| CDY15425 | Canola | nucleus | 20.8 | 48.6 |
| VIT_07s0005g03340.t01 | Wine grape | nucleus | 50.0 | 46.47 |
| CDY35519 | Canola | nucleus | 46.0 | 45.82 |
| PGSC0003DMT400051682 | Potato | nucleus | 46.8 | 45.35 |
| KRH32183 | Soybean | nucleus | 42.8 | 45.15 |
| Solyc06g083900.2.1 | Tomato | nucleus | 45.6 | 44.71 |
| CDY08989 | Canola | nucleus | 46.8 | 44.32 |
| CDX92979 | Canola | nucleus | 46.4 | 42.8 |
| CDX85074 | Canola | nucleus | 48.4 | 42.46 |
| CDX77536 | Canola | nucleus | 48.4 | 42.46 |
| CDY55883 | Canola | nucleus | 35.2 | 42.11 |
| CDY35101 | Canola | nucleus | 34.8 | 41.83 |
| CDY35097 | Canola | nucleus | 22.8 | 41.3 |
| CDX79305 | Canola | nucleus | 40.0 | 40.49 |
| KRG95664 | Soybean | nucleus | 46.8 | 40.21 |
| KRH67378 | Soybean | nucleus | 47.2 | 40.14 |
| CDY00800 | Canola | nucleus | 34.4 | 39.45 |
| CDY43399 | Canola | nucleus | 35.6 | 37.55 |
| CDY24243 | Canola | nucleus | 35.2 | 37.29 |
| CDX68004 | Canola | nucleus | 39.6 | 37.08 |
| CDX88513 | Canola | nucleus | 40.0 | 37.04 |
| CDX87403 | Canola | nucleus | 39.6 | 36.67 |
| CDY51002 | Canola | nucleus | 39.6 | 35.48 |
| CDX81764 | Canola | nucleus | 39.6 | 35.48 |
| CDY42408 | Canola | nucleus | 36.8 | 30.77 |
| CDY10506 | Canola | nucleus | 36.8 | 30.77 |
| CDX73801 | Canola | nucleus | 0.8 | 2.99 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078FAV9 | UniProt:A0A078FAV9 | EnsemblPlants:CDY10182 | ProteinID:CDY10182 |
| ProteinID:CDY10182.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00031997001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF695 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EC63FC | SEG:seg |
Description
BnaC05g04250DBnaC05g04250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAV9]
Coordinates
chrLK032001:+:418473..419991
Molecular Weight (calculated)
28519.1 Da
IEP (calculated)
5.182
GRAVY (calculated)
-0.809
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRRPCCEKM GLKKGPWSAE EDRILISHIR LHGHPNWRAL PQLAGLLRCG KSCRLRWINY LRPDIKRGNF TPQEEETIIN LHQSLGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRIQHNQ DQNISETICD NDEQLVSVMD EKRPSSPQQQ SSSSTNISAV TTSSNNNDVS NNNIKDSATS PEDVLPLIDE SFWSEVVSMD
201: YNISGDEEIK IEDWESSLDS NIKGYNHDME SWFDNLLTSN LTTGENSDIF
101: DNEIKNVWHT HLKKRIQHNQ DQNISETICD NDEQLVSVMD EKRPSSPQQQ SSSSTNISAV TTSSNNNDVS NNNIKDSATS PEDVLPLIDE SFWSEVVSMD
201: YNISGDEEIK IEDWESSLDS NIKGYNHDME SWFDNLLTSN LTTGENSDIF
001: MGRRPCCEKI GLKKGPWSAE EDRILINYIS LHGHPNWRAL PKLAGLLRCG KSCRLRWINY LRPDIKRGNF TPHEEDTIIS LHQLLGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLHHSQ DQNNKEDFVS TTAAEMPTSP QQQSSSSADI SAITTLGNNN DISNSNKDSA TSSEDVLAII DESFWSEVVL MDCDISGNEK
201: NEKKIENWEG SLDRNDKGYN HDMEFWFDHL TSSSCIIGEM SDISEF
101: DNEIKNVWHT HLKKRLHHSQ DQNNKEDFVS TTAAEMPTSP QQQSSSSADI SAITTLGNNN DISNSNKDSA TSSEDVLAII DESFWSEVVL MDCDISGNEK
201: NEKKIENWEG SLDRNDKGYN HDMEFWFDHL TSSSCIIGEM SDISEF
Arabidopsis Description
ATMYB13Transcription factor MYB13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.