Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10182 | Canola | nucleus | 76.83 | 75.6 |
| Bra015481.1-P | Field mustard | nucleus | 76.42 | 74.6 |
| CDY47723 | Canola | nucleus | 76.42 | 74.6 |
| GSMUA_Achr4P18180_001 | Banana | nucleus | 38.62 | 65.07 |
| AT2G31180.1 | Thale cress | nucleus | 64.63 | 63.86 |
| Zm00001d017268_P001 | Maize | nucleus | 50.81 | 51.23 |
| TraesCS6B01G257000.1 | Wheat | nucleus | 50.0 | 50.62 |
| TraesCS6D01G210500.1 | Wheat | nucleus | 49.19 | 50.42 |
| Os02t0624300-01 | Rice | nucleus | 52.85 | 50.39 |
| HORVU6Hr1G058640.1 | Barley | nucleus | 49.59 | 50.0 |
| TraesCS6D01G210800.1 | Wheat | nucleus | 44.31 | 49.77 |
| TraesCS6D01G211100.1 | Wheat | nucleus | 50.41 | 49.4 |
| TraesCS6A01G224400.1 | Wheat | nucleus | 48.37 | 49.38 |
| EES07173 | Sorghum | nucleus | 51.63 | 49.22 |
| TraesCS6D01G211200.1 | Wheat | nucleus | 48.78 | 49.18 |
| TraesCS6D01G210900.1 | Wheat | nucleus | 48.37 | 49.17 |
| TraesCS6B01G257300.1 | Wheat | nucleus | 50.41 | 49.01 |
| HORVU6Hr1G058580.1 | Barley | nucleus | 48.37 | 48.97 |
| TraesCS6B01G257100.1 | Wheat | nucleus | 49.59 | 48.41 |
| VIT_07s0005g03340.t01 | Wine grape | nucleus | 52.44 | 47.96 |
| TraesCS6A01G224100.1 | Wheat | nucleus | 50.0 | 47.86 |
| Zm00001d051149_P001 | Maize | nucleus | 50.41 | 47.69 |
| TraesCS6B01G257200.1 | Wheat | nucleus | 49.19 | 47.64 |
| TraesCS6D01G211400.1 | Wheat | nucleus | 49.19 | 47.64 |
| TraesCS6A01G224300.1 | Wheat | nucleus | 48.37 | 47.6 |
| PGSC0003DMT400051682 | Potato | nucleus | 49.59 | 47.29 |
| GSMUA_Achr11P... | Banana | nucleus | 45.12 | 47.23 |
| Solyc06g083900.2.1 | Tomato | nucleus | 48.78 | 47.06 |
| TraesCS6A01G224200.1 | Wheat | nucleus | 48.37 | 47.04 |
| GSMUA_Achr5P14600_001 | Banana | nucleus | 43.5 | 46.72 |
| GSMUA_Achr4P21910_001 | Banana | nucleus | 41.46 | 46.58 |
| GSMUA_Achr1P09180_001 | Banana | nucleus | 43.5 | 46.52 |
| TraesCS6A01G224000.1 | Wheat | nucleus | 48.37 | 46.48 |
| TraesCS1A01G155300.1 | Wheat | nucleus | 49.59 | 46.39 |
| KRH32183 | Soybean | nucleus | 43.9 | 45.57 |
| GSMUA_Achr5P03920_001 | Banana | nucleus | 44.31 | 45.42 |
| TraesCS1B01G172500.1 | Wheat | nucleus | 46.75 | 44.23 |
| TraesCS1D01G154000.1 | Wheat | nucleus | 47.15 | 44.11 |
| AT3G23250.1 | Thale cress | nucleus | 50.81 | 43.86 |
| Os10t0478300-01 | Rice | nucleus | 49.19 | 43.84 |
| Zm00001d032694_P001 | Maize | nucleus | 47.56 | 43.01 |
| EES12516 | Sorghum | nucleus | 47.15 | 42.65 |
| KRG95664 | Soybean | nucleus | 50.41 | 42.61 |
| HORVU6Hr1G058630.3 | Barley | nucleus, plastid | 50.41 | 42.61 |
| KRH67378 | Soybean | nucleus | 50.41 | 42.18 |
| HORVU6Hr1G058620.1 | Barley | nucleus | 49.59 | 42.07 |
| Zm00001d025864_P001 | Maize | nucleus | 47.15 | 41.88 |
| Zm00001d014029_P001 | Maize | nucleus | 47.15 | 41.73 |
| TraesCS2D01G378400.2 | Wheat | nucleus | 51.63 | 40.19 |
| TraesCS2B01G399200.1 | Wheat | nucleus | 51.63 | 40.19 |
| Zm00001d003064_P001 | Maize | nucleus | 47.97 | 40.14 |
| EER91482 | Sorghum | nucleus | 47.97 | 39.86 |
| GSMUA_Achr4P28850_001 | Banana | nucleus | 43.9 | 39.71 |
| AT3G12820.1 | Thale cress | nucleus | 38.21 | 39.33 |
| TraesCS2A01G381900.2 | Wheat | nucleus | 51.22 | 38.53 |
| GSMUA_Achr6P31520_001 | Banana | nucleus | 37.8 | 38.11 |
| GSMUA_Achr11P... | Banana | nucleus | 46.75 | 37.95 |
| TraesCS6A01G265300.1 | Wheat | nucleus | 39.84 | 37.4 |
| GSMUA_Achr5P03520_001 | Banana | nucleus | 44.72 | 36.3 |
| AT1G16490.1 | Thale cress | nucleus | 40.24 | 36.13 |
| GSMUA_Achr2P18090_001 | Banana | nucleus | 43.9 | 35.64 |
| GSMUA_Achr11P... | Banana | nucleus | 41.06 | 35.19 |
| GSMUA_Achr5P18600_001 | Banana | nucleus | 47.56 | 35.14 |
| GSMUA_Achr4P27350_001 | Banana | nucleus | 41.87 | 34.33 |
| TraesCS2D01G444200.1 | Wheat | nucleus | 43.5 | 33.75 |
| Zm00001d026204_P001 | Maize | nucleus | 43.5 | 32.52 |
| AT1G56160.1 | Thale cress | nucleus | 39.02 | 32.43 |
| AT1G79180.2 | Thale cress | nucleus | 41.87 | 31.5 |
| Os02t0695200-01 | Rice | nucleus | 43.5 | 31.47 |
| Os04t0517100-01 | Rice | nucleus | 22.76 | 31.46 |
| TraesCS6B01G292500.1 | Wheat | nucleus | 41.46 | 30.82 |
| TraesCS6D01G249200.1 | Wheat | nucleus | 41.87 | 30.65 |
| TraesCS2B01G466500.1 | Wheat | nucleus | 44.72 | 30.47 |
| TraesCS2B01G466400.1 | Wheat | nucleus | 43.9 | 30.42 |
| TraesCS2D01G444300.1 | Wheat | nucleus | 44.72 | 30.3 |
| Zm00001d051520_P001 | Maize | nucleus | 41.46 | 30.0 |
| TraesCS2A01G445500.1 | Wheat | nucleus | 44.31 | 29.7 |
| Os04t0594100-01 | Rice | nucleus | 43.5 | 28.84 |
| EES12768 | Sorghum | nucleus | 43.9 | 28.72 |
| Zm00001d026203_P001 | Maize | nucleus | 43.09 | 27.75 |
| EES05685 | Sorghum | nucleus | 42.28 | 26.8 |
| Zm00001d002476_P001 | Maize | nucleus | 42.68 | 25.93 |
| HORVU6Hr1G067380.1 | Barley | nucleus | 41.06 | 22.9 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:837127 | UniProt:A0A178W702 | ProteinID:AAF80215.1 | EMBL:AB493437 |
| ProteinID:AEE27955.1 | ArrayExpress:AT1G06180 | EnsemblPlantsGene:AT1G06180 | RefSeq:AT1G06180 | TAIR:AT1G06180 | RefSeq:AT1G06180-TAIR-G |
| EnsemblPlants:AT1G06180.1 | TAIR:AT1G06180.1 | Symbol:ATMYB13 | EMBL:AY519550 | EMBL:BT025173 | ProteinID:CAA90748.1 |
| GO:GO:0000003 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0006950 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 |
| GO:GO:0009739 | GO:GO:0009751 | GO:GO:0009753 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 |
| GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| InterPro:Myb_dom | RefSeq:NP_172108.1 | ProteinID:OAP12852.1 | PFAM:PF00249 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF695 | UniProt:Q9LNC9 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00000A8D57 |
| SEG:seg | : | : | : | : | : |
Description
ATMYB13Transcription factor MYB13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC9]
Coordinates
chr1:+:1889362..1891276
Molecular Weight (calculated)
27952.6 Da
IEP (calculated)
6.176
GRAVY (calculated)
-0.719
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRRPCCEKI GLKKGPWSAE EDRILINYIS LHGHPNWRAL PKLAGLLRCG KSCRLRWINY LRPDIKRGNF TPHEEDTIIS LHQLLGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLHHSQ DQNNKEDFVS TTAAEMPTSP QQQSSSSADI SAITTLGNNN DISNSNKDSA TSSEDVLAII DESFWSEVVL MDCDISGNEK
201: NEKKIENWEG SLDRNDKGYN HDMEFWFDHL TSSSCIIGEM SDISEF
101: DNEIKNVWHT HLKKRLHHSQ DQNNKEDFVS TTAAEMPTSP QQQSSSSADI SAITTLGNNN DISNSNKDSA TSSEDVLAII DESFWSEVVL MDCDISGNEK
201: NEKKIENWEG SLDRNDKGYN HDMEFWFDHL TSSSCIIGEM SDISEF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.