Factsheet for HORVU6Hr1G058640.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G001280.1
HORVU2Hr1G016740.4
HORVU3Hr1G038010.1
HORVU3Hr1G079210.4
HORVU4Hr1G026290.3
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31180.1	HORVU0Hr1G001280.1	AT2G41090.1	17360592
AT2G31180.1	HORVU2Hr1G016740.4	AT2G41090.1	17360592
AT2G31180.1	HORVU3Hr1G038010.1	AT2G41090.1	17360592
AT2G31180.1	HORVU3Hr1G079210.4	AT2G41090.1	17360592
AT2G31180.1	HORVU4Hr1G026290.3	AT2G41090.1	17360592
AT2G31180.1	HORVU5Hr1G014060.1	AT2G41090.1	17360592
AT2G31180.1	HORVU5Hr1G014070.2	AT2G41090.1	17360592
AT2G31180.1	HORVU5Hr1G044710.4	AT2G41090.1	17360592
AT2G31180.1	HORVU0Hr1G001280.1	AT2G41100.1	17360592
AT2G31180.1	HORVU2Hr1G016740.4	AT2G41100.1	17360592
AT2G31180.1	HORVU3Hr1G038010.1	AT2G41100.1	17360592
AT2G31180.1	HORVU3Hr1G079210.4	AT2G41100.1	17360592
AT2G31180.1	HORVU4Hr1G026290.3	AT2G41100.1	17360592
AT2G31180.1	HORVU5Hr1G014060.1	AT2G41100.1	17360592
AT2G31180.1	HORVU5Hr1G014070.2	AT2G41100.1	17360592
AT2G31180.1	HORVU5Hr1G044710.4	AT2G41100.1	17360592
AT2G31180.1	HORVU0Hr1G001280.1	AT5G21274.1	17360592
AT2G31180.1	HORVU2Hr1G016740.4	AT5G21274.1	17360592
AT2G31180.1	HORVU3Hr1G038010.1	AT5G21274.1	17360592
AT2G31180.1	HORVU3Hr1G079210.4	AT5G21274.1	17360592
AT2G31180.1	HORVU4Hr1G026290.3	AT5G21274.1	17360592
AT2G31180.1	HORVU5Hr1G014060.1	AT5G21274.1	17360592
AT2G31180.1	HORVU5Hr1G014070.2	AT5G21274.1	17360592
AT2G31180.1	HORVU5Hr1G044710.4	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G210900.1	Wheat	nucleus	85.66	86.36
TraesCS6A01G224200.1	Wheat	nucleus	89.34	86.17
HORVU6Hr1G058580.1	Barley	nucleus	81.97	82.3
VIT_05s0049g01010.t01	Wine grape	nucleus	42.62	72.22
HORVU6Hr1G058630.3	Barley	nucleus, plastid	86.07	72.16
HORVU6Hr1G058620.1	Barley	nucleus	85.66	72.07
Os02t0624300-01	Rice	nucleus	74.59	70.54
EES07173	Sorghum	nucleus	73.77	69.77
Zm00001d017268_P001	Maize	nucleus	68.85	68.85
TraesCS6D01G210800.1	Wheat	nucleus	61.48	68.49
Zm00001d051149_P001	Maize	nucleus	71.31	66.92
PGSC0003DMT400034263	Potato	mitochondrion	19.26	55.29
KRG97042	Soybean	nucleus	44.67	51.42
KRH68789	Soybean	nucleus	43.44	50.72
AT1G06180.1	Thale cress	nucleus	50.0	49.59
PGSC0003DMT400060168	Potato	nucleus	44.26	49.09
Solyc05g055030.1.1	Tomato	nucleus	43.85	49.08
VIT_05s0049g01020.t01	Wine grape	nucleus	50.0	48.22
AT2G31180.1	Thale cress	nucleus	49.18	48.19
PGSC0003DMT400034878	Potato	nucleus	49.59	48.02
PGSC0003DMT400044362	Potato	nucleus	52.46	47.76
Solyc09g090130.2.1	Tomato	nucleus	52.46	47.76
KRH34142	Soybean	nucleus	40.98	47.62
Bra021708.1-P	Field mustard	nucleus	48.77	47.6
VIT_07s0005g03340.t01	Wine grape	nucleus	52.46	47.58
Solyc06g053610.2.1	Tomato	nucleus	51.64	47.55
KRH56057	Soybean	nucleus	31.15	47.5
KRG92419	Soybean	nucleus	52.87	47.43
PGSC0003DMT400042007	Potato	nucleus	52.05	47.39
Bra022831.1-P	Field mustard	nucleus	47.54	47.15
KRH69121	Soybean	nucleus	50.41	46.59
KRH34387	Soybean	nucleus	52.05	46.18
KRH32183	Soybean	nucleus	44.67	45.99
KRH31704	Soybean	nucleus	49.59	45.83
Solyc03g005570.2.1	Tomato	nucleus	47.13	45.82
Bra015481.1-P	Field mustard	nucleus	47.13	45.63
Bra018267.1-P	Field mustard	nucleus	47.13	45.45
Solyc06g083900.2.1	Tomato	nucleus	47.13	45.1
KRG95664	Soybean	nucleus	53.69	45.02
KRH67378	Soybean	nucleus	54.1	44.9
PGSC0003DMT400051682	Potato	nucleus	46.72	44.19
KRH22481	Soybean	nucleus	39.75	42.73
KRH25458	Soybean	nucleus	38.93	40.6
KRH56060	Soybean	nucleus	38.11	40.43
VIT_12s0134g00480.t01	Wine grape	nucleus	42.21	40.08
PGSC0003DMT400097096	Potato	nucleus	34.43	39.44
Solyc07g054960.1.1	Tomato	nucleus	34.43	38.89
KRH56061	Soybean	nucleus	38.11	38.43
PGSC0003DMT400035748	Potato	nucleus	35.66	37.66
KRH25468	Soybean	nucleus	36.07	37.61
Solyc12g005640.1.1	Tomato	nucleus	35.66	37.34
KRH56056	Soybean	nucleus	35.66	37.02
PGSC0003DMT400097604	Potato	nucleus	31.56	36.67
PGSC0003DMT400067318	Potato	nucleus	36.07	36.21
PGSC0003DMT400067321	Potato	nucleus	35.66	35.51
VIT_12s0134g00490.t01	Wine grape	nucleus	36.07	34.92
PGSC0003DMT400067322	Potato	nucleus	34.84	34.69
KRH26874	Soybean	nucleus	35.66	34.66
Solyc07g055000.1.1	Tomato	nucleus	34.02	34.3
Solyc07g053230.2.1	Tomato	nucleus	35.25	34.26
PGSC0003DMT400039029	Potato	nucleus	34.02	34.16
Solyc07g053240.2.1	Tomato	nucleus	34.84	34.14
Solyc06g033870.1.1	Tomato	nucleus	34.02	33.6
Solyc03g093940.1.1	Tomato	nucleus	29.51	33.18
PGSC0003DMT400093355	Potato	nucleus	32.38	32.78
Solyc06g034000.1.1	Tomato	nucleus	31.56	32.63
VIT_00s0203g00170.t01	Wine grape	nucleus	35.66	32.46
Solyc03g093930.2.1	Tomato	nucleus	31.97	31.84
PGSC0003DMT400051510	Potato	nucleus	31.15	31.28
Solyc03g093890.2.1	Tomato	nucleus	31.97	30.83
PGSC0003DMT400051513	Potato	nucleus	31.15	30.77
PGSC0003DMT400021498	Potato	nucleus	29.51	30.0
PGSC0003DMT400086165	Potato	nucleus	34.84	29.62
KRH56059	Soybean	nucleus	38.93	29.32
KRH56058	Soybean	nucleus	38.11	29.25
PGSC0003DMT400070912	Potato	nucleus	31.15	29.23
KRH25461	Soybean	nucleus	36.48	29.18
KRH26875	Soybean	nucleus	36.89	28.75
KRH25459	Soybean	nucleus	33.2	26.91
PGSC0003DMT400021503	Potato	nucleus	19.26	24.48
PGSC0003DMT400021501	Potato	nucleus	19.67	24.37
HORVU6Hr1G067380.1	Barley	nucleus	43.03	23.81
Solyc07g054980.1.1	Tomato	nucleus	36.89	19.23
CDX73801	Canola	nucleus	1.23	4.48

Protein Annotations

EnsemblPlants:HORVU6Hr1G058640.1	EnsemblPlantsGene:HORVU6Hr1G058640	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF695	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI0002962553	UniProt:M0VN47	MapMan:15.5.2.1	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:384040684..384042122

Molecular Weight (calculated)

26800.2 Da

IEP (calculated)

5.616

GRAVY (calculated)

-0.563

Length

244 amino acids

Sequence
(BLAST)

001: MGRAPCCEKT GIKRGPWTAE EDMTLVAHIE QHGHSNWRAL PKQAGLLRCG KSCRLRWINY LRPDIKRGNF TSEEEDAIIQ LHAMLGNRWS TIAARLPGRT
101: DNEIKNVWHT HLKKRLESSS KPSIQAEPKR NAKKPAVAAS ALEGPTSEPA SSLEQSLSTS SATDYSVASS LENTGSSSCS EEYQIDDSFW SETLAMSVDS
201: FSSGMEIGDT FGADSASPSS SNDEMDFWVT LFMQAGDIQS LSHI

Best Arabidopsis Sequence Match ( AT3G23250.1 )
(BLAST)

001: MGRAPCCEKM GLKRGPWTPE EDQILVSFIL NHGHSNWRAL PKQAGLLRCG KSCRLRWMNY LKPDIKRGNF TKEEEDAIIS LHQILGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLEDYQ PAKPKTSNKK KGTKPKSESV ITSSNSTRSE SELADSSNPS GESLFSTSPS TSEVSSMTLI SHDGYSNEIN MDNKPGDIST
201: IDQECVSFET FGADIDESFW KETLYSQDEH NYVSNDLEVA GLVEIQQEFQ NLGSANNEMI FDSEMDFWFD VLARTGGEQD LLAGL

Arabidopsis Description

MYB15Transcription factor MYB15 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.