Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G058640.1 | Barley | nucleus | 72.07 | 85.66 |
| HORVU6Hr1G058580.1 | Barley | nucleus | 68.28 | 81.48 |
| HORVU6Hr1G058630.3 | Barley | nucleus, plastid | 77.59 | 77.32 |
| VIT_05s0049g01010.t01 | Wine grape | nucleus | 36.55 | 73.61 |
| Os02t0624300-01 | Rice | nucleus | 62.41 | 70.16 |
| EES07173 | Sorghum | nucleus | 60.34 | 67.83 |
| Zm00001d017268_P001 | Maize | nucleus | 56.21 | 66.8 |
| Zm00001d051149_P001 | Maize | nucleus | 59.66 | 66.54 |
| PGSC0003DMT400034263 | Potato | mitochondrion | 15.86 | 54.12 |
| KRG97042 | Soybean | nucleus | 38.62 | 52.83 |
| KRH68789 | Soybean | nucleus | 37.59 | 52.15 |
| AT1G06180.1 | Thale cress | nucleus | 42.07 | 49.59 |
| KRH34142 | Soybean | nucleus | 35.86 | 49.52 |
| KRH56057 | Soybean | nucleus | 27.24 | 49.38 |
| PGSC0003DMT400060168 | Potato | nucleus | 37.24 | 49.09 |
| VIT_05s0049g01020.t01 | Wine grape | nucleus | 42.41 | 48.62 |
| Solyc09g090130.2.1 | Tomato | nucleus | 44.83 | 48.51 |
| PGSC0003DMT400044362 | Potato | nucleus | 44.83 | 48.51 |
| Solyc05g055030.1.1 | Tomato | nucleus | 36.21 | 48.17 |
| PGSC0003DMT400034878 | Potato | nucleus | 41.72 | 48.02 |
| Bra021708.1-P | Field mustard | nucleus | 41.03 | 47.6 |
| Bra015481.1-P | Field mustard | nucleus | 41.03 | 47.22 |
| Solyc06g053610.2.1 | Tomato | nucleus | 43.1 | 47.17 |
| AT2G31180.1 | Thale cress | nucleus | 40.34 | 46.99 |
| VIT_07s0005g03340.t01 | Wine grape | nucleus | 43.45 | 46.84 |
| PGSC0003DMT400042007 | Potato | nucleus | 43.1 | 46.64 |
| Bra022831.1-P | Field mustard | nucleus | 39.31 | 46.34 |
| KRG92419 | Soybean | nucleus | 43.1 | 45.96 |
| Solyc06g083900.2.1 | Tomato | nucleus | 40.0 | 45.49 |
| KRH69121 | Soybean | nucleus | 41.38 | 45.45 |
| Solyc03g005570.2.1 | Tomato | nucleus | 39.31 | 45.42 |
| KRH32183 | Soybean | nucleus | 36.9 | 45.15 |
| KRH34387 | Soybean | nucleus | 42.76 | 45.09 |
| Bra018267.1-P | Field mustard | nucleus | 39.31 | 45.06 |
| PGSC0003DMT400051682 | Potato | nucleus | 40.0 | 44.96 |
| KRH31704 | Soybean | nucleus | 40.34 | 44.32 |
| KRG95664 | Soybean | nucleus | 43.79 | 43.64 |
| KRH67378 | Soybean | nucleus | 43.79 | 43.2 |
| KRH22481 | Soybean | nucleus | 33.1 | 42.29 |
| KRH25458 | Soybean | nucleus | 32.76 | 40.6 |
| KRH56060 | Soybean | nucleus | 32.07 | 40.43 |
| KRH56061 | Soybean | nucleus | 32.76 | 39.26 |
| VIT_12s0134g00480.t01 | Wine grape | nucleus | 34.48 | 38.91 |
| PGSC0003DMT400035748 | Potato | nucleus | 30.34 | 38.1 |
| Solyc07g054960.1.1 | Tomato | nucleus | 28.28 | 37.96 |
| Solyc12g005640.1.1 | Tomato | nucleus | 30.34 | 37.77 |
| PGSC0003DMT400097096 | Potato | nucleus | 27.59 | 37.56 |
| PGSC0003DMT400067318 | Potato | nucleus | 31.38 | 37.45 |
| PGSC0003DMT400067321 | Potato | nucleus | 31.03 | 36.73 |
| KRH25468 | Soybean | nucleus | 28.97 | 35.9 |
| PGSC0003DMT400097604 | Potato | nucleus | 25.86 | 35.71 |
| PGSC0003DMT400067322 | Potato | nucleus | 30.0 | 35.51 |
| Solyc07g053230.2.1 | Tomato | nucleus | 30.69 | 35.46 |
| KRH56056 | Soybean | nucleus | 28.62 | 35.32 |
| Solyc07g055000.1.1 | Tomato | nucleus | 29.31 | 35.12 |
| Solyc07g053240.2.1 | Tomato | nucleus | 30.0 | 34.94 |
| PGSC0003DMT400039029 | Potato | nucleus | 28.97 | 34.57 |
| VIT_12s0134g00490.t01 | Wine grape | nucleus | 30.0 | 34.52 |
| KRH26874 | Soybean | nucleus | 29.66 | 34.26 |
| Solyc03g093940.1.1 | Tomato | nucleus | 24.83 | 33.18 |
| VIT_00s0203g00170.t01 | Wine grape | nucleus | 30.34 | 32.84 |
| Solyc06g033870.1.1 | Tomato | nucleus | 27.93 | 32.79 |
| PGSC0003DMT400093355 | Potato | nucleus | 26.9 | 32.37 |
| Solyc06g034000.1.1 | Tomato | nucleus | 25.86 | 31.78 |
| Solyc03g093930.2.1 | Tomato | nucleus | 26.55 | 31.43 |
| Solyc03g093890.2.1 | Tomato | nucleus | 26.9 | 30.83 |
| PGSC0003DMT400051510 | Potato | nucleus | 25.52 | 30.45 |
| PGSC0003DMT400021498 | Potato | nucleus | 24.83 | 30.0 |
| PGSC0003DMT400051513 | Potato | nucleus | 25.52 | 29.96 |
| KRH56058 | Soybean | nucleus | 32.41 | 29.56 |
| KRH25461 | Soybean | nucleus | 31.03 | 29.51 |
| KRH26875 | Soybean | nucleus | 31.72 | 29.39 |
| PGSC0003DMT400070912 | Potato | nucleus | 26.21 | 29.23 |
| PGSC0003DMT400086165 | Potato | nucleus | 28.62 | 28.92 |
| KRH56059 | Soybean | nucleus | 32.07 | 28.7 |
| KRH25459 | Soybean | nucleus | 28.97 | 27.91 |
| HORVU6Hr1G067380.1 | Barley | nucleus | 37.24 | 24.49 |
| PGSC0003DMT400021503 | Potato | nucleus | 15.86 | 23.96 |
| PGSC0003DMT400021501 | Potato | nucleus | 16.21 | 23.86 |
| Solyc07g054980.1.1 | Tomato | nucleus | 32.07 | 19.87 |
| CDX73801 | Canola | nucleus | 1.38 | 5.97 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G058620.1 | EnsemblPlantsGene:HORVU6Hr1G058620 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF695 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI000B468577 | UniProt:A0A287UBD8 | MapMan:15.5.2.1 | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:383612550..383613668
Molecular Weight (calculated)
32326.1 Da
IEP (calculated)
7.832
GRAVY (calculated)
-0.682
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: QPFPFRQCQH TEQSIHHTLD RERERERSRG INKLAMGRSP CCEKMGLKRG PWTAEEDMTL VAHIEQHGHS NWRALPKQAG LLRCGKSCRL RWINYLRPDI
101: KRGNFTGEEE DAIIQLHAIL GNRWSTIAAR LPGRTDNEIK NVWHTHLKKR IESPKPSGQA RGTTALPKRK AKKPAVAVSM LKGPTSDPVS SPEQCLSMSP
201: ERSLSTSSAT ERSMASSLEN TGSPSSEVFQ IDDSFWSETL AMSVDSCGFE METGDTLGAD SASPSSSNDE MDFWVTLFLQ AGDMQSLSQI
101: KRGNFTGEEE DAIIQLHAIL GNRWSTIAAR LPGRTDNEIK NVWHTHLKKR IESPKPSGQA RGTTALPKRK AKKPAVAVSM LKGPTSDPVS SPEQCLSMSP
201: ERSLSTSSAT ERSMASSLEN TGSPSSEVFQ IDDSFWSETL AMSVDSCGFE METGDTLGAD SASPSSSNDE MDFWVTLFLQ AGDMQSLSQI
001: MGRAPCCEKM GLKRGPWTPE EDQILVSFIL NHGHSNWRAL PKQAGLLRCG KSCRLRWMNY LKPDIKRGNF TKEEEDAIIS LHQILGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLEDYQ PAKPKTSNKK KGTKPKSESV ITSSNSTRSE SELADSSNPS GESLFSTSPS TSEVSSMTLI SHDGYSNEIN MDNKPGDIST
201: IDQECVSFET FGADIDESFW KETLYSQDEH NYVSNDLEVA GLVEIQQEFQ NLGSANNEMI FDSEMDFWFD VLARTGGEQD LLAGL
101: DNEIKNVWHT HLKKRLEDYQ PAKPKTSNKK KGTKPKSESV ITSSNSTRSE SELADSSNPS GESLFSTSPS TSEVSSMTLI SHDGYSNEIN MDNKPGDIST
201: IDQECVSFET FGADIDESFW KETLYSQDEH NYVSNDLEVA GLVEIQQEFQ NLGSANNEMI FDSEMDFWFD VLARTGGEQD LLAGL
Arabidopsis Description
MYB15Transcription factor MYB15 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTC4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.