Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g053610.2.1 | Tomato | nucleus | 94.78 | 95.85 |
| GSMUA_Achr4P18180_001 | Banana | nucleus | 39.18 | 71.92 |
| PGSC0003DMT400034878 | Potato | nucleus | 60.45 | 64.29 |
| PGSC0003DMT400044362 | Potato | nucleus | 62.69 | 62.69 |
| PGSC0003DMT400034263 | Potato | mitochondrion | 19.03 | 60.0 |
| GSMUA_Achr1P09180_001 | Banana | nucleus | 47.39 | 55.22 |
| GSMUA_Achr4P21910_001 | Banana | nucleus | 44.4 | 54.34 |
| GSMUA_Achr5P14600_001 | Banana | nucleus | 45.52 | 53.28 |
| GSMUA_Achr5P03920_001 | Banana | nucleus | 47.39 | 52.92 |
| GSMUA_Achr11P... | Banana | nucleus | 46.27 | 52.77 |
| TraesCS6D01G211100.1 | Wheat | nucleus | 48.88 | 52.19 |
| HORVU6Hr1G058640.1 | Barley | nucleus | 47.39 | 52.05 |
| PGSC0003DMT400060168 | Potato | nucleus | 42.54 | 51.82 |
| EES07173 | Sorghum | nucleus | 49.63 | 51.55 |
| TraesCS6D01G210500.1 | Wheat | nucleus | 45.9 | 51.25 |
| Zm00001d017268_P001 | Maize | nucleus | 46.64 | 51.23 |
| TraesCS6D01G210900.1 | Wheat | nucleus | 45.9 | 50.83 |
| Os02t0624300-01 | Rice | nucleus | 48.88 | 50.78 |
| VIT_07s0005g03340.t01 | Wine grape | nucleus | 50.75 | 50.56 |
| TraesCS6D01G211200.1 | Wheat | nucleus | 45.9 | 50.41 |
| TraesCS6A01G224300.1 | Wheat | nucleus | 47.01 | 50.4 |
| TraesCS6B01G257100.1 | Wheat | nucleus | 47.39 | 50.4 |
| TraesCS6B01G257000.1 | Wheat | nucleus | 45.52 | 50.21 |
| HORVU6Hr1G058580.1 | Barley | nucleus | 45.52 | 50.21 |
| TraesCS6B01G257300.1 | Wheat | nucleus | 47.39 | 50.2 |
| TraesCS6D01G211400.1 | Wheat | nucleus | 47.39 | 50.0 |
| EES12516 | Sorghum | nucleus | 50.75 | 50.0 |
| TraesCS6A01G224400.1 | Wheat | nucleus | 44.78 | 49.79 |
| TraesCS6A01G224000.1 | Wheat | nucleus | 47.39 | 49.61 |
| TraesCS6A01G224200.1 | Wheat | nucleus | 46.64 | 49.41 |
| TraesCS6A01G224100.1 | Wheat | nucleus | 47.01 | 49.03 |
| TraesCS6B01G257200.1 | Wheat | nucleus | 46.27 | 48.82 |
| Zm00001d025864_P001 | Maize | nucleus | 50.0 | 48.38 |
| KRH32183 | Soybean | nucleus | 42.54 | 48.1 |
| Zm00001d051149_P001 | Maize | nucleus | 46.64 | 48.08 |
| PGSC0003DMT400051682 | Potato | nucleus | 46.27 | 48.06 |
| TraesCS6D01G210800.1 | Wheat | nucleus | 38.81 | 47.49 |
| KRG95664 | Soybean | nucleus | 51.49 | 47.42 |
| KRH67378 | Soybean | nucleus | 51.49 | 46.94 |
| Zm00001d003064_P001 | Maize | nucleus | 50.75 | 46.26 |
| HORVU6Hr1G058630.3 | Barley | nucleus, plastid | 47.76 | 43.99 |
| TraesCS1D01G154000.1 | Wheat | nucleus | 42.91 | 43.73 |
| TraesCS1A01G155300.1 | Wheat | nucleus | 42.91 | 43.73 |
| TraesCS1B01G172500.1 | Wheat | nucleus | 42.16 | 43.46 |
| HORVU6Hr1G058620.1 | Barley | nucleus | 46.64 | 43.1 |
| Zm00001d032694_P001 | Maize | nucleus | 42.91 | 42.28 |
| Os10t0478300-01 | Rice | nucleus | 42.91 | 41.67 |
| Zm00001d014029_P001 | Maize | nucleus | 42.91 | 41.37 |
| TraesCS2D01G378400.2 | Wheat | nucleus | 48.51 | 41.14 |
| EER91482 | Sorghum | nucleus | 45.15 | 40.88 |
| TraesCS2B01G399200.1 | Wheat | nucleus | 48.13 | 40.82 |
| GSMUA_Achr11P... | Banana | nucleus | 45.9 | 40.59 |
| PGSC0003DMT400067321 | Potato | nucleus | 35.82 | 39.18 |
| TraesCS2A01G381900.2 | Wheat | nucleus | 47.76 | 39.14 |
| GSMUA_Achr4P28850_001 | Banana | nucleus | 39.55 | 38.97 |
| TraesCS6A01G265300.1 | Wheat | nucleus | 37.69 | 38.55 |
| PGSC0003DMT400067322 | Potato | nucleus | 35.07 | 38.37 |
| PGSC0003DMT400067318 | Potato | nucleus | 34.33 | 37.86 |
| GSMUA_Achr6P31520_001 | Banana | nucleus | 34.33 | 37.7 |
| PGSC0003DMT400035748 | Potato | nucleus | 32.46 | 37.66 |
| PGSC0003DMT400029235 | Potato | nucleus | 33.58 | 37.66 |
| PGSC0003DMT400097604 | Potato | nucleus | 29.48 | 37.62 |
| PGSC0003DMT400039029 | Potato | nucleus | 33.96 | 37.45 |
| PGSC0003DMT400089342 | Potato | nucleus | 33.58 | 37.34 |
| GSMUA_Achr2P18090_001 | Banana | nucleus | 41.42 | 36.63 |
| PGSC0003DMT400097096 | Potato | nucleus | 29.1 | 36.62 |
| GSMUA_Achr5P03520_001 | Banana | nucleus | 41.04 | 36.3 |
| Os04t0517100-01 | Rice | nucleus | 23.88 | 35.96 |
| GSMUA_Achr11P... | Banana | nucleus | 38.43 | 35.89 |
| PGSC0003DMT400093355 | Potato | nucleus | 31.72 | 35.27 |
| GSMUA_Achr5P18600_001 | Banana | nucleus | 43.28 | 34.83 |
| GSMUA_Achr4P27350_001 | Banana | nucleus | 38.43 | 34.33 |
| PGSC0003DMT400070912 | Potato | nucleus | 32.84 | 33.85 |
| TraesCS2D01G444200.1 | Wheat | nucleus | 39.93 | 33.75 |
| PGSC0003DMT400051513 | Potato | nucleus | 30.97 | 33.6 |
| PGSC0003DMT400021498 | Potato | nucleus | 29.85 | 33.33 |
| PGSC0003DMT400051510 | Potato | nucleus | 29.1 | 32.1 |
| Zm00001d026204_P001 | Maize | nucleus | 39.18 | 31.91 |
| Zm00001d051520_P001 | Maize | nucleus | 39.55 | 31.18 |
| TraesCS6B01G292500.1 | Wheat | nucleus | 38.43 | 31.12 |
| TraesCS6D01G249200.1 | Wheat | nucleus | 38.06 | 30.36 |
| Os02t0695200-01 | Rice | nucleus | 38.43 | 30.29 |
| TraesCS2B01G466500.1 | Wheat | nucleus | 40.67 | 30.19 |
| TraesCS2B01G466400.1 | Wheat | nucleus | 39.93 | 30.14 |
| TraesCS2D01G444300.1 | Wheat | nucleus | 40.67 | 30.03 |
| EES12768 | Sorghum | nucleus | 41.79 | 29.79 |
| TraesCS2A01G445500.1 | Wheat | nucleus | 40.3 | 29.43 |
| PGSC0003DMT400086165 | Potato | nucleus | 31.34 | 29.27 |
| Os04t0594100-01 | Rice | nucleus | 40.3 | 29.11 |
| Zm00001d026203_P001 | Maize | nucleus | 39.55 | 27.75 |
| PGSC0003DMT400021503 | Potato | nucleus | 19.78 | 27.6 |
| Zm00001d002476_P001 | Maize | nucleus | 41.42 | 27.41 |
| EES05685 | Sorghum | nucleus | 39.55 | 27.32 |
| PGSC0003DMT400021501 | Potato | nucleus | 19.78 | 26.9 |
| HORVU6Hr1G067380.1 | Barley | nucleus | 38.43 | 23.36 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102595003 | MapMan:15.5.2.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M1BCC5 | InterPro:Myb_dom | PFAM:PF00249 |
| EnsemblPlantsGene:PGSC0003DMG400016292 | PGSC:PGSC0003DMG400016292 | EnsemblPlants:PGSC0003DMT400042007 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF695 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000295E2B1 | RefSeq:XP_006350689.1 | SEG:seg |
Description
THM18 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016292]
Coordinates
chr6:-:39586222..39589448
Molecular Weight (calculated)
30768.1 Da
IEP (calculated)
6.632
GRAVY (calculated)
-0.843
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCEKM GLKKGPWSPE EDNILISYIQ NNGHSNWRAL PKLAGLLRCG KSCRLRWTNY LRPDIKRGNF TKEEEDTIIK LHENLGNRWS AIAARLPGRT
101: DNEIKNIWHT NLKKKLKNYQ LSQNSKRHSK INHVSNKGPT PSESSNNSDF STNSTSTKQH IKIAPNSPQL SSSEMSSVTL VVDDNQMVII KEEKIESSSS
201: EYFPKIDESF WTDELSTENN MVVGHDQEIQ VREENVDIFT TSSKMEEDMD FWYNVFIKTG DLPELPEF
101: DNEIKNIWHT NLKKKLKNYQ LSQNSKRHSK INHVSNKGPT PSESSNNSDF STNSTSTKQH IKIAPNSPQL SSSEMSSVTL VVDDNQMVII KEEKIESSSS
201: EYFPKIDESF WTDELSTENN MVVGHDQEIQ VREENVDIFT TSSKMEEDMD FWYNVFIKTG DLPELPEF
001: MGRAPCCEKM GLKRGPWTPE EDQILVSFIL NHGHSNWRAL PKQAGLLRCG KSCRLRWMNY LKPDIKRGNF TKEEEDAIIS LHQILGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLEDYQ PAKPKTSNKK KGTKPKSESV ITSSNSTRSE SELADSSNPS GESLFSTSPS TSEVSSMTLI SHDGYSNEIN MDNKPGDIST
201: IDQECVSFET FGADIDESFW KETLYSQDEH NYVSNDLEVA GLVEIQQEFQ NLGSANNEMI FDSEMDFWFD VLARTGGEQD LLAGL
101: DNEIKNVWHT HLKKRLEDYQ PAKPKTSNKK KGTKPKSESV ITSSNSTRSE SELADSSNPS GESLFSTSPS TSEVSSMTLI SHDGYSNEIN MDNKPGDIST
201: IDQECVSFET FGADIDESFW KETLYSQDEH NYVSNDLEVA GLVEIQQEFQ NLGSANNEMI FDSEMDFWFD VLARTGGEQD LLAGL
Arabidopsis Description
MYB15Transcription factor MYB15 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTC4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.