Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d032694_P001 | Maize | nucleus | 77.03 | 83.82 |
| Zm00001d014029_P001 | Maize | nucleus | 75.0 | 79.86 |
| VIT_05s0049g01010.t01 | Wine grape | nucleus | 31.08 | 63.89 |
| Os10t0478300-01 | Rice | nucleus | 59.46 | 63.77 |
| TraesCS1B01G172500.1 | Wheat | nucleus | 52.03 | 59.23 |
| TraesCS1D01G154000.1 | Wheat | nucleus | 52.36 | 58.94 |
| TraesCS1A01G155300.1 | Wheat | nucleus | 52.36 | 58.94 |
| PGSC0003DMT400034263 | Potato | mitochondrion | 14.86 | 51.76 |
| EES07173 | Sorghum | nucleus | 44.93 | 51.55 |
| VIT_05s0049g01020.t01 | Wine grape | nucleus | 41.22 | 48.22 |
| KRG97042 | Soybean | nucleus | 34.46 | 48.11 |
| KRH34142 | Soybean | nucleus | 34.12 | 48.1 |
| AT1G06180.1 | Thale cress | nucleus | 39.86 | 47.97 |
| KRH68789 | Soybean | nucleus | 33.78 | 47.85 |
| KRH56057 | Soybean | nucleus | 25.68 | 47.5 |
| KRH69121 | Soybean | nucleus | 41.89 | 46.97 |
| Solyc05g055030.1.1 | Tomato | nucleus | 34.46 | 46.79 |
| KRH31704 | Soybean | nucleus | 41.55 | 46.59 |
| KRG92419 | Soybean | nucleus | 42.57 | 46.32 |
| AT2G31180.1 | Thale cress | nucleus | 38.85 | 46.18 |
| VIT_07s0005g03340.t01 | Wine grape | nucleus | 41.55 | 45.72 |
| Bra015481.1-P | Field mustard | nucleus | 38.85 | 45.63 |
| PGSC0003DMT400034878 | Potato | nucleus | 38.85 | 45.63 |
| Bra021708.1-P | Field mustard | nucleus | 38.51 | 45.6 |
| EES12516 | Sorghum | nucleus | 41.89 | 45.59 |
| KRH34387 | Soybean | nucleus | 42.23 | 45.45 |
| PGSC0003DMT400042007 | Potato | nucleus | 40.88 | 45.15 |
| Solyc03g005570.2.1 | Tomato | nucleus | 38.18 | 45.02 |
| PGSC0003DMT400060168 | Potato | nucleus | 33.45 | 45.0 |
| Solyc06g053610.2.1 | Tomato | nucleus | 40.2 | 44.91 |
| Bra022831.1-P | Field mustard | nucleus | 37.16 | 44.72 |
| Solyc06g083900.2.1 | Tomato | nucleus | 37.84 | 43.92 |
| Bra018267.1-P | Field mustard | nucleus | 37.5 | 43.87 |
| PGSC0003DMT400051682 | Potato | nucleus | 37.84 | 43.41 |
| KRG95664 | Soybean | nucleus | 42.57 | 43.3 |
| Solyc09g090130.2.1 | Tomato | nucleus | 39.19 | 43.28 |
| PGSC0003DMT400044362 | Potato | nucleus | 39.19 | 43.28 |
| KRH67378 | Soybean | nucleus | 42.23 | 42.52 |
| KRH22481 | Soybean | nucleus | 31.42 | 40.97 |
| KRH32183 | Soybean | nucleus | 32.09 | 40.08 |
| KRH56060 | Soybean | nucleus | 30.07 | 38.7 |
| PGSC0003DMT400097096 | Potato | nucleus | 27.7 | 38.5 |
| KRH25458 | Soybean | nucleus | 30.41 | 38.46 |
| VIT_12s0134g00480.t01 | Wine grape | nucleus | 33.11 | 38.13 |
| Solyc07g054960.1.1 | Tomato | nucleus | 27.7 | 37.96 |
| KRH56061 | Soybean | nucleus | 30.41 | 37.19 |
| PGSC0003DMT400035748 | Potato | nucleus | 28.04 | 35.93 |
| KRH25468 | Soybean | nucleus | 28.38 | 35.9 |
| KRH56056 | Soybean | nucleus | 28.38 | 35.74 |
| PGSC0003DMT400097604 | Potato | nucleus | 25.34 | 35.71 |
| PGSC0003DMT400067321 | Potato | nucleus | 29.39 | 35.51 |
| VIT_12s0134g00490.t01 | Wine grape | nucleus | 30.07 | 35.32 |
| Solyc12g005640.1.1 | Tomato | nucleus | 27.7 | 35.19 |
| PGSC0003DMT400067322 | Potato | nucleus | 29.05 | 35.1 |
| Solyc07g053230.2.1 | Tomato | nucleus | 29.73 | 35.06 |
| Solyc06g034000.1.1 | Tomato | nucleus | 27.7 | 34.75 |
| KRH26874 | Soybean | nucleus | 29.39 | 34.66 |
| PGSC0003DMT400039029 | Potato | nucleus | 28.38 | 34.57 |
| Solyc03g093940.1.1 | Tomato | nucleus | 25.34 | 34.56 |
| PGSC0003DMT400093355 | Potato | nucleus | 28.04 | 34.44 |
| PGSC0003DMT400067318 | Potato | nucleus | 28.04 | 34.16 |
| Solyc07g053240.2.1 | Tomato | nucleus | 28.72 | 34.14 |
| VIT_00s0203g00170.t01 | Wine grape | nucleus | 30.74 | 33.96 |
| Solyc03g093930.2.1 | Tomato | nucleus | 27.36 | 33.06 |
| Solyc07g055000.1.1 | Tomato | nucleus | 27.03 | 33.06 |
| PGSC0003DMT400051513 | Potato | nucleus | 27.36 | 32.79 |
| PGSC0003DMT400051510 | Potato | nucleus | 26.69 | 32.51 |
| Solyc06g033870.1.1 | Tomato | nucleus | 27.03 | 32.39 |
| EES12768 | Sorghum | nucleus | 40.88 | 32.18 |
| Solyc03g093890.2.1 | Tomato | nucleus | 27.03 | 31.62 |
| PGSC0003DMT400021498 | Potato | nucleus | 25.34 | 31.25 |
| KRH25461 | Soybean | nucleus | 31.76 | 30.82 |
| PGSC0003DMT400070912 | Potato | nucleus | 26.69 | 30.38 |
| KRH56058 | Soybean | nucleus | 32.43 | 30.19 |
| KRH56059 | Soybean | nucleus | 32.77 | 29.94 |
| EES05685 | Sorghum | nucleus | 38.51 | 29.38 |
| KRH26875 | Soybean | nucleus | 30.74 | 29.07 |
| KRH25459 | Soybean | nucleus | 28.72 | 28.24 |
| PGSC0003DMT400086165 | Potato | nucleus | 26.69 | 27.53 |
| PGSC0003DMT400021503 | Potato | nucleus | 14.86 | 22.92 |
| PGSC0003DMT400021501 | Potato | nucleus | 15.2 | 22.84 |
| Solyc07g054980.1.1 | Tomato | nucleus | 30.41 | 19.23 |
| CDX73801 | Canola | nucleus | 1.35 | 5.97 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:8067417 | UniProt:C5WYF1 | EnsemblPlants:EER91482 | ProteinID:EER91482 |
| ProteinID:EER91482.1 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom |
| PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF533 | InterPro:SANT/Myb | SMART:SM00717 |
| EnsemblPlantsGene:SORBI_3001G219200 | SUPFAM:SSF46689 | UniParc:UPI0001A82520 | RefSeq:XP_002464484.1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr1:+:20426821..20429277
Molecular Weight (calculated)
32542.9 Da
IEP (calculated)
4.845
GRAVY (calculated)
-0.703
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCEKE GLRRGAWSPE EDQRLVAYIQ QNGHPNWRAL PRQAGLLRCG KSCRLRWINY LRPDIKRGNF SADEEALIVR LHRELGNRWS AIAAQLPGRT
101: DNEIKNVWHT HIKKRLEDGD DGEDKKKAAR KSKPAAAAKR SSAAKKTADA NAVDNNSEQQ QPFLTASPGL SSSVSSGVTT FSTATDSAAA VSSADNAATT
201: SHQQEQEQEQ EQEQLGASKA EMDMEMESFI SSAEFPPIDD TFWSSADVMD MGLGAMDEEL GLALAGPPSS STRDEDMEFW LKMLLEAGDM RDLSVL
101: DNEIKNVWHT HIKKRLEDGD DGEDKKKAAR KSKPAAAAKR SSAAKKTADA NAVDNNSEQQ QPFLTASPGL SSSVSSGVTT FSTATDSAAA VSSADNAATT
201: SHQQEQEQEQ EQEQLGASKA EMDMEMESFI SSAEFPPIDD TFWSSADVMD MGLGAMDEEL GLALAGPPSS STRDEDMEFW LKMLLEAGDM RDLSVL
001: MGRAPCCEKM GLKRGPWTPE EDQILVSFIL NHGHSNWRAL PKQAGLLRCG KSCRLRWMNY LKPDIKRGNF TKEEEDAIIS LHQILGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLEDYQ PAKPKTSNKK KGTKPKSESV ITSSNSTRSE SELADSSNPS GESLFSTSPS TSEVSSMTLI SHDGYSNEIN MDNKPGDIST
201: IDQECVSFET FGADIDESFW KETLYSQDEH NYVSNDLEVA GLVEIQQEFQ NLGSANNEMI FDSEMDFWFD VLARTGGEQD LLAGL
101: DNEIKNVWHT HLKKRLEDYQ PAKPKTSNKK KGTKPKSESV ITSSNSTRSE SELADSSNPS GESLFSTSPS TSEVSSMTLI SHDGYSNEIN MDNKPGDIST
201: IDQECVSFET FGADIDESFW KETLYSQDEH NYVSNDLEVA GLVEIQQEFQ NLGSANNEMI FDSEMDFWFD VLARTGGEQD LLAGL
Arabidopsis Description
MYB15Transcription factor MYB15 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTC4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.