Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G155300.1 | Wheat | nucleus | 93.16 | 93.16 |
| TraesCS1B01G172500.1 | Wheat | nucleus | 90.87 | 91.92 |
| VIT_05s0049g01010.t01 | Wine grape | nucleus | 34.6 | 63.19 |
| Os10t0478300-01 | Rice | nucleus | 61.22 | 58.33 |
| Zm00001d032694_P001 | Maize | nucleus | 57.79 | 55.88 |
| PGSC0003DMT400034263 | Potato | mitochondrion | 17.49 | 54.12 |
| Zm00001d014029_P001 | Maize | nucleus | 56.27 | 53.24 |
| EER91482 | Sorghum | nucleus | 58.94 | 52.36 |
| TraesCS6D01G210500.1 | Wheat | nucleus | 44.49 | 48.75 |
| KRH56057 | Soybean | nucleus | 29.66 | 48.75 |
| TraesCS6D01G211200.1 | Wheat | nucleus | 44.49 | 47.95 |
| TraesCS6D01G210900.1 | Wheat | nucleus | 44.11 | 47.93 |
| TraesCS6D01G210800.1 | Wheat | nucleus | 39.54 | 47.49 |
| AT1G06180.1 | Thale cress | nucleus | 44.11 | 47.15 |
| TraesCS6D01G211100.1 | Wheat | nucleus | 44.87 | 47.01 |
| AT2G31180.1 | Thale cress | nucleus | 44.49 | 46.99 |
| PGSC0003DMT400034878 | Potato | nucleus | 44.87 | 46.83 |
| Bra021708.1-P | Field mustard | nucleus | 44.49 | 46.8 |
| Solyc05g055030.1.1 | Tomato | nucleus | 38.02 | 45.87 |
| Bra022831.1-P | Field mustard | nucleus | 42.21 | 45.12 |
| PGSC0003DMT400060168 | Potato | nucleus | 37.64 | 45.0 |
| KRH34142 | Soybean | nucleus | 35.74 | 44.76 |
| Bra018267.1-P | Field mustard | nucleus | 42.97 | 44.66 |
| Solyc03g005570.2.1 | Tomato | nucleus | 42.59 | 44.62 |
| TraesCS6D01G211400.1 | Wheat | nucleus | 42.97 | 44.49 |
| Bra015481.1-P | Field mustard | nucleus | 42.21 | 44.05 |
| Solyc09g090130.2.1 | Tomato | nucleus | 44.49 | 43.66 |
| VIT_05s0049g01020.t01 | Wine grape | nucleus | 41.83 | 43.48 |
| PGSC0003DMT400044362 | Potato | nucleus | 44.11 | 43.28 |
| PGSC0003DMT400042007 | Potato | nucleus | 43.73 | 42.91 |
| VIT_07s0005g03340.t01 | Wine grape | nucleus | 43.73 | 42.75 |
| Solyc06g053610.2.1 | Tomato | nucleus | 42.97 | 42.64 |
| KRH68789 | Soybean | nucleus | 33.84 | 42.58 |
| KRG97042 | Soybean | nucleus | 34.22 | 42.45 |
| KRH31704 | Soybean | nucleus | 42.59 | 42.42 |
| KRH34387 | Soybean | nucleus | 44.11 | 42.18 |
| KRH69121 | Soybean | nucleus | 42.21 | 42.05 |
| Solyc06g083900.2.1 | Tomato | nucleus | 40.3 | 41.57 |
| KRG92419 | Soybean | nucleus | 42.97 | 41.54 |
| KRG95664 | Soybean | nucleus | 45.63 | 41.24 |
| PGSC0003DMT400051682 | Potato | nucleus | 39.92 | 40.7 |
| KRH67378 | Soybean | nucleus | 45.25 | 40.48 |
| KRH32183 | Soybean | nucleus | 36.12 | 40.08 |
| KRH22481 | Soybean | nucleus | 33.84 | 39.21 |
| TraesCS2D01G378400.2 | Wheat | nucleus | 46.77 | 38.92 |
| KRH56061 | Soybean | nucleus | 35.36 | 38.43 |
| PGSC0003DMT400097096 | Potato | nucleus | 30.8 | 38.03 |
| Solyc07g054960.1.1 | Tomato | nucleus | 31.18 | 37.96 |
| KRH25458 | Soybean | nucleus | 33.46 | 37.61 |
| KRH56060 | Soybean | nucleus | 32.32 | 36.96 |
| PGSC0003DMT400097604 | Potato | nucleus | 28.9 | 36.19 |
| VIT_12s0134g00480.t01 | Wine grape | nucleus | 35.36 | 36.19 |
| KRH56056 | Soybean | nucleus | 31.56 | 35.32 |
| KRH25468 | Soybean | nucleus | 31.18 | 35.04 |
| Solyc03g093940.1.1 | Tomato | nucleus | 28.9 | 35.02 |
| PGSC0003DMT400067322 | Potato | nucleus | 31.56 | 33.88 |
| PGSC0003DMT400067321 | Potato | nucleus | 31.56 | 33.88 |
| Solyc07g053230.2.1 | Tomato | nucleus | 31.94 | 33.47 |
| Solyc07g053240.2.1 | Tomato | nucleus | 31.18 | 32.93 |
| PGSC0003DMT400067318 | Potato | nucleus | 30.42 | 32.92 |
| PGSC0003DMT400035748 | Potato | nucleus | 28.9 | 32.9 |
| TraesCS2D01G444200.1 | Wheat | nucleus | 39.54 | 32.81 |
| PGSC0003DMT400051513 | Potato | nucleus | 30.8 | 32.79 |
| PGSC0003DMT400093355 | Potato | nucleus | 30.04 | 32.78 |
| Solyc06g034000.1.1 | Tomato | nucleus | 29.28 | 32.63 |
| Solyc12g005640.1.1 | Tomato | nucleus | 28.9 | 32.62 |
| Solyc03g093930.2.1 | Tomato | nucleus | 29.66 | 31.84 |
| Solyc07g055000.1.1 | Tomato | nucleus | 29.28 | 31.82 |
| VIT_00s0203g00170.t01 | Wine grape | nucleus | 32.32 | 31.72 |
| VIT_12s0134g00490.t01 | Wine grape | nucleus | 30.04 | 31.35 |
| PGSC0003DMT400070912 | Potato | nucleus | 30.8 | 31.15 |
| PGSC0003DMT400051510 | Potato | nucleus | 28.52 | 30.86 |
| PGSC0003DMT400039029 | Potato | nucleus | 28.52 | 30.86 |
| Solyc03g093890.2.1 | Tomato | nucleus | 29.66 | 30.83 |
| Solyc06g033870.1.1 | Tomato | nucleus | 28.9 | 30.77 |
| KRH26874 | Soybean | nucleus | 29.28 | 30.68 |
| PGSC0003DMT400021498 | Potato | nucleus | 27.76 | 30.42 |
| TraesCS6D01G249200.1 | Wheat | nucleus | 38.4 | 30.06 |
| TraesCS2D01G444300.1 | Wheat | nucleus | 39.92 | 28.93 |
| KRH26875 | Soybean | nucleus | 33.08 | 27.8 |
| KRH56058 | Soybean | nucleus | 33.46 | 27.67 |
| KRH25461 | Soybean | nucleus | 31.56 | 27.21 |
| KRH25459 | Soybean | nucleus | 30.8 | 26.91 |
| PGSC0003DMT400086165 | Potato | nucleus | 28.9 | 26.48 |
| KRH56059 | Soybean | nucleus | 32.32 | 26.23 |
| PGSC0003DMT400021503 | Potato | nucleus | 16.73 | 22.92 |
| PGSC0003DMT400021501 | Potato | nucleus | 17.11 | 22.84 |
| Solyc07g054980.1.1 | Tomato | nucleus | 31.56 | 17.73 |
| CDX73801 | Canola | nucleus | 0.76 | 2.99 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G154000.1 | EnsemblPlantsGene:TraesCS1D01G154000 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF533 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:214600446..214602159
Molecular Weight (calculated)
28769.5 Da
IEP (calculated)
6.851
GRAVY (calculated)
-0.647
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCEKD GLKRGAWSPE EDQRLADYIA QHGHSNWRAL PKHAGLLRCG KSCRLRWVNY LSPDIKRGNF TADEEDRIIR LHQALGNRWS VIAAQLPGRT
101: DNEIKNVWHS HLKKRLEDGL KPAADHDAGG SGRQKSRKQA KARSATVDAR ERHTSLQGQS SSGLTCSTVT ESAAAVTSSP SDNATITSAS HGHQLVKEDT
201: FSSEAVTDNS FLSSTDVTGM IDLGAMGEDL SLVMSSSSTW SDDQDFWINM LQEGGDIIDL PKL
101: DNEIKNVWHS HLKKRLEDGL KPAADHDAGG SGRQKSRKQA KARSATVDAR ERHTSLQGQS SSGLTCSTVT ESAAAVTSSP SDNATITSAS HGHQLVKEDT
201: FSSEAVTDNS FLSSTDVTGM IDLGAMGEDL SLVMSSSSTW SDDQDFWINM LQEGGDIIDL PKL
001: MGRRPCCEKI GLKKGPWSAE EDRILINYIS LHGHPNWRAL PKLAGLLRCG KSCRLRWINY LRPDIKRGNF TPHEEDTIIS LHQLLGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLHHSQ DQNNKEDFVS TTAAEMPTSP QQQSSSSADI SAITTLGNNN DISNSNKDSA TSSEDVLAII DESFWSEVVL MDCDISGNEK
201: NEKKIENWEG SLDRNDKGYN HDMEFWFDHL TSSSCIIGEM SDISEF
101: DNEIKNVWHT HLKKRLHHSQ DQNNKEDFVS TTAAEMPTSP QQQSSSSADI SAITTLGNNN DISNSNKDSA TSSEDVLAII DESFWSEVVL MDCDISGNEK
201: NEKKIENWEG SLDRNDKGYN HDMEFWFDHL TSSSCIIGEM SDISEF
Arabidopsis Description
ATMYB13Transcription factor MYB13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.