Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G057200.1 | Wheat | cytosol | 96.32 | 96.32 |
| TraesCS5D01G068000.1 | Wheat | cytosol | 93.86 | 91.07 |
| HORVU5Hr1G014070.2 | Barley | cytosol | 92.64 | 90.96 |
| HORVU5Hr1G014060.1 | Barley | cytosol, plastid | 93.86 | 71.5 |
| Os12t0603800-00 | Rice | cytosol | 71.78 | 70.48 |
| PGSC0003DMT400046278 | Potato | cytosol | 32.52 | 68.83 |
| CDY65072 | Canola | cytosol | 62.58 | 68.46 |
| Solyc10g077010.1.1 | Tomato | cytosol | 62.58 | 68.46 |
| Solyc01g008950.2.1 | Tomato | nucleus | 62.58 | 68.46 |
| Bra020155.1-P | Field mustard | cytosol | 62.58 | 68.46 |
| PGSC0003DMT400070437 | Potato | cytosol | 62.58 | 68.46 |
| PGSC0003DMT400058435 | Potato | cytosol | 62.58 | 68.46 |
| Bra006595.1-P | Field mustard | cytosol | 62.58 | 68.46 |
| Bra002368.1-P | Field mustard | cytosol | 62.58 | 68.46 |
| PGSC0003DMT400018569 | Potato | cytosol | 62.58 | 68.46 |
| Solyc11g072240.1.1 | Tomato | cytosol | 62.58 | 68.46 |
| Solyc12g099990.1.1 | Tomato | nucleus | 62.58 | 68.46 |
| KRG94975 | Soybean | nucleus | 62.58 | 68.46 |
| VIT_08s0040g00470.t01 | Wine grape | cytosol | 61.96 | 67.79 |
| CDY56411 | Canola | cytosol | 61.96 | 67.79 |
| CDY04474 | Canola | cytosol | 61.96 | 67.79 |
| CDX96148 | Canola | cytosol | 61.96 | 67.79 |
| Solyc10g081170.1.1 | Tomato | extracellular | 61.96 | 67.79 |
| AT3G56800.1 | Thale cress | cytosol | 61.96 | 67.79 |
| Bra000214.1-P | Field mustard | cytosol | 61.96 | 67.79 |
| Bra003251.1-P | Field mustard | cytosol | 61.96 | 67.79 |
| Bra019453.1-P | Field mustard | cytosol | 61.96 | 67.79 |
| Bra004166.1-P | Field mustard | cytosol | 61.96 | 67.79 |
| Bra014671.1-P | Field mustard | cytosol | 61.96 | 67.79 |
| Bra012037.1-P | Field mustard | cytosol | 61.96 | 67.79 |
| PGSC0003DMT400054299 | Potato | cytosol | 46.63 | 67.26 |
| Bra025438.1-P | Field mustard | cytosol | 46.63 | 67.26 |
| CDY55678 | Canola | cytosol | 61.35 | 67.11 |
| Bra007269.1-P | Field mustard | cytosol | 61.35 | 67.11 |
| CDX99690 | Canola | cytosol | 61.35 | 67.11 |
| AT5G21274.1 | Thale cress | cytosol | 61.35 | 67.11 |
| CDY27651 | Canola | cytosol | 61.35 | 66.67 |
| CDX92401 | Canola | cytosol | 54.6 | 66.42 |
| Bra034981.1-P | Field mustard | cytosol | 58.9 | 66.21 |
| CDY12321 | Canola | cytosol | 58.9 | 66.21 |
| VIT_06s0009g01910.t01 | Wine grape | cytosol | 61.96 | 66.01 |
| Zm00001d041430_P001 | Maize | cytosol | 66.87 | 64.5 |
| AT1G66410.2 | Thale cress | cytosol | 62.58 | 64.15 |
| KRH18664 | Soybean | cytosol | 53.99 | 62.86 |
| AT2G41110.2 | Thale cress | cytosol | 61.96 | 62.73 |
| EES16322 | Sorghum | cytosol | 66.26 | 61.36 |
| TraesCS3D01G188600.1 | Wheat | cytosol | 61.35 | 59.88 |
| PGSC0003DMT400014123 | Potato | mitochondrion | 44.79 | 59.84 |
| TraesCS5D01G392200.1 | Wheat | cytosol | 55.83 | 58.71 |
| AT5G37780.3 | Thale cress | cytosol | 62.58 | 58.29 |
| CDX75970 | Canola | cytosol | 39.88 | 57.02 |
| CDY48191 | Canola | cytosol | 61.96 | 56.42 |
| Bra034317.1-P | Field mustard | cytosol | 61.96 | 56.42 |
| CDX77060 | Canola | cytosol | 61.96 | 56.11 |
| AT2G27030.3 | Thale cress | cytosol | 61.96 | 55.8 |
| TraesCS3D01G328300.1 | Wheat | cytosol | 60.74 | 54.4 |
| TraesCS3D01G194500.2 | Wheat | cytosol | 52.76 | 54.09 |
| PGSC0003DMT400097662 | Potato | cytosol, mitochondrion | 55.21 | 52.02 |
| KRG89812 | Soybean | cytosol, mitochondrion | 52.15 | 51.52 |
| TraesCS5D01G153400.1 | Wheat | cytosol | 55.83 | 50.56 |
| CDY30947 | Canola | cytosol | 61.96 | 48.33 |
| AT3G43810.2 | Thale cress | cytosol | 62.58 | 47.66 |
| CDY57144 | Canola | cytosol | 41.1 | 45.89 |
| CDY21220 | Canola | cytosol | 61.35 | 45.25 |
| TraesCS7D01G313100.1 | Wheat | cytosol | 38.65 | 42.57 |
| TraesCS1D01G308000.1 | Wheat | cytosol | 34.97 | 38.0 |
| AT2G41090.1 | Thale cress | cytosol | 43.56 | 37.17 |
| TraesCS4D01G126100.1 | Wheat | cytosol | 54.6 | 36.93 |
| TraesCS2D01G173900.1 | Wheat | cytosol, mitochondrion | 37.42 | 36.31 |
| TraesCS1D01G197600.1 | Wheat | cytosol | 39.26 | 32.99 |
| TraesCS3D01G217900.1 | Wheat | cytosol | 38.04 | 24.31 |
| AT2G41100.1 | Thale cress | cytosol | 44.79 | 22.53 |
| TraesCS5D01G392100.1 | Wheat | mitochondrion, nucleus | 3.68 | 4.38 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G068100.1 | EnsemblPlantsGene:TraesCS5D01G068100 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR23050 | PANTHER:PTHR23050:SF307 |
| PFAM:PF13499 | PFscan:PS50222 | ScanProsite:PS00018 | SEG:seg | SMART:SM00054 | SUPFAM:SSF47473 |
| TIGR:cd00051 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:64144011..64144502
Molecular Weight (calculated)
18101.9 Da
IEP (calculated)
3.899
GRAVY (calculated)
-0.455
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAGAAAISS EQMSEFREAF SFFDKDGDGC ITADELSTVI RSLGQTPTPE ELRDMVRDVD ADGNGTIEFA EFLALMSRKA DADADASDPE EELREAFRVF
101: DKDHDGHISK AELRHVMVSL GEKLTDVEVE EMIQEADLDG DGLVNFDEFV RMMMLSDSDQ QQH
101: DKDHDGHISK AELRHVMVSL GEKLTDVEVE EMIQEADLDG DGLVNFDEFV RMMMLSDSDQ QQH
001: MADQLTDEQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMAKKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVEEMIREAD VDGDGQINYE EFVKIMMAK
101: ISAAELRHVM TNLGEKLTDE EVEEMIREAD VDGDGQINYE EFVKIMMAK
Arabidopsis Description
CAM4Calmodulin 4 [Source:UniProtKB/TrEMBL;Acc:F4IEU4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.