Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G436400.1 | Wheat | plastid | 86.84 | 87.3 |
| TraesCS2A01G266100.1 | Wheat | cytosol | 71.58 | 82.42 |
| HORVU1Hr1G094330.1 | Barley | cytosol | 80.53 | 81.82 |
| TraesCS1B01G471500.1 | Wheat | mitochondrion | 79.47 | 81.62 |
| TraesCS1D01G444800.1 | Wheat | cytosol, plastid | 79.47 | 81.18 |
| TraesCS2A01G266000.1 | Wheat | plastid | 78.95 | 78.12 |
| TraesCS5A01G404200.1 | Wheat | cytosol | 52.63 | 56.82 |
| TraesCS5A01G404100.1 | Wheat | cytosol | 51.05 | 55.11 |
| Os07t0123100-00 | Rice | extracellular | 58.42 | 54.15 |
| Zm00001d018717_P001 | Maize | cytosol | 55.26 | 54.12 |
| TraesCS5A01G404000.1 | Wheat | cytosol | 50.53 | 53.63 |
| EER95817 | Sorghum | nucleus | 54.74 | 53.61 |
| Zm00001d007974_P001 | Maize | nucleus | 50.0 | 49.22 |
| TraesCS5A01G403900.1 | Wheat | plastid | 52.63 | 42.92 |
| TraesCS5A01G379900.1 | Wheat | plastid | 37.37 | 42.52 |
| GSMUA_Achr7P27420_001 | Banana | cytosol | 32.63 | 37.58 |
| GSMUA_Achr2P08730_001 | Banana | cytosol | 32.63 | 37.35 |
| CDY45243 | Canola | cytosol | 27.37 | 37.14 |
| CDX77946 | Canola | cytosol | 28.42 | 36.49 |
| Solyc02g089990.1.1 | Tomato | nucleus | 30.53 | 36.02 |
| Bra036862.1-P | Field mustard | cytosol | 27.89 | 35.81 |
| PGSC0003DMT400026013 | Potato | cytosol, nucleus, plastid | 30.53 | 35.8 |
| Bra012084.1-P | Field mustard | cytosol | 26.32 | 35.71 |
| CDX81387 | Canola | cytosol | 28.95 | 35.48 |
| CDX73789 | Canola | cytosol | 28.42 | 35.29 |
| VIT_00s0207g00140.t01 | Wine grape | cytosol | 30.0 | 34.97 |
| CDY28982 | Canola | nucleus | 28.42 | 34.62 |
| AT5G66580.1 | Thale cress | cytosol | 28.42 | 34.62 |
| PGSC0003DMT400059007 | Potato | cytosol, nucleus, plastid | 26.32 | 34.48 |
| Bra031814.1-P | Field mustard | cytosol | 27.37 | 34.44 |
| CDY55087 | Canola | cytosol | 27.37 | 34.44 |
| VIT_00s0207g00180.t01 | Wine grape | cytosol | 29.47 | 34.36 |
| Bra037163.1-P | Field mustard | cytosol | 27.89 | 34.19 |
| CDY18612 | Canola | cytosol | 27.89 | 34.19 |
| Bra012887.1-P | Field mustard | cytosol, nucleus, plastid | 27.89 | 33.97 |
| CDX90684 | Canola | cytosol, nucleus, plastid | 27.89 | 33.97 |
| KRH76906 | Soybean | cytosol | 28.42 | 33.96 |
| KRH28562 | Soybean | cytosol | 28.95 | 33.74 |
| AT3G50800.1 | Thale cress | cytosol, nucleus, plastid | 26.84 | 33.55 |
| CDX72612 | Canola | nucleus | 30.0 | 33.33 |
| Bra017789.1-P | Field mustard | nucleus | 30.0 | 33.33 |
| Bra032151.1-P | Field mustard | cytosol | 28.42 | 33.13 |
| CDY39665 | Canola | cytosol | 28.42 | 33.13 |
| Solyc03g044860.1.1 | Tomato | cytosol | 25.26 | 32.88 |
| CDY42708 | Canola | nucleus | 29.47 | 32.75 |
| AT4G37240.1 | Thale cress | cytosol, nucleus, plastid | 28.95 | 32.74 |
| CDY28078 | Canola | cytosol | 27.37 | 32.5 |
| PGSC0003DMT400007187 | Potato | cytosol | 25.79 | 32.24 |
| Solyc02g065430.1.1 | Tomato | cytosol | 25.79 | 32.24 |
| AT2G23690.1 | Thale cress | cytosol | 27.37 | 31.9 |
| KRH69989 | Soybean | cytosol | 27.37 | 31.52 |
| CDX76853 | Canola | cytosol | 26.84 | 31.1 |
| CDY46066 | Canola | cytosol | 26.32 | 30.67 |
| CDX89594 | Canola | cytosol | 26.32 | 30.67 |
| CDY24764 | Canola | cytosol, nucleus, plastid | 27.89 | 30.64 |
| CDY22462 | Canola | cytosol, nucleus, plastid | 27.89 | 30.64 |
| KRH08345 | Soybean | cytosol | 27.37 | 30.41 |
| Bra039208.1-P | Field mustard | cytosol | 22.11 | 30.22 |
| Bra010578.1-P | Field mustard | cytosol, nucleus, plastid | 23.68 | 30.0 |
| CDX69254 | Canola | cytosol | 27.37 | 29.21 |
| CDX75606 | Canola | nucleus | 26.84 | 29.14 |
| Bra011715.1-P | Field mustard | nucleus | 26.84 | 29.14 |
| TraesCS7A01G394600.1 | Wheat | plastid | 30.0 | 29.08 |
| TraesCS6A01G168500.1 | Wheat | mitochondrion | 28.42 | 29.03 |
| TraesCS5A01G269900.1 | Wheat | plastid | 29.47 | 29.02 |
| TraesCS6A01G168600.1 | Wheat | plastid | 30.0 | 28.79 |
| VIT_03s0063g01940.t01 | Wine grape | cytosol | 25.79 | 28.16 |
| TraesCS7A01G394700.1 | Wheat | mitochondrion, plastid | 29.47 | 28.0 |
| TraesCS5A01G270100.1 | Wheat | plastid | 30.53 | 26.24 |
| TraesCS5A01G270000.1 | Wheat | plastid | 29.47 | 25.81 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G436300.1 | EnsemblPlantsGene:TraesCS1A01G436300 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF62 | PFAM:PF14009 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:586598527..586599099
Molecular Weight (calculated)
19817.8 Da
IEP (calculated)
8.028
GRAVY (calculated)
0.016
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLCMSSGSA PAAVRAKGQL AWTAGQVLLP TGELREYPRL ATAGQVLDDS VAGDAGWFLC DADEMGFDGP VAAVAEAEEL RPGQIYFVLP AEALRNGLRP
101: EDLAALAVRA SAALIIKANT AASSATAGRR RRAGSVAPLV FAPPQEVNET VAYKTVPALA TKRRPVARAK SAGRMQSRFA PDLTAIPECE
101: EDLAALAVRA SAALIIKANT AASSATAGRR RRAGSVAPLV FAPPQEVNET VAYKTVPALA TKRRPVARAK SAGRMQSRFA PDLTAIPECE
001: MGICSSYEST QVATAKLILH DGRMMEFTSP VKVGYVLQKN PMCFICNSDD MDFDNVVSAI SADEEFQLGQ LYFALPLSSL HHSLKAEEMA ALAVKASSAL
101: MRSGGSCGRD KCRCRRKCVS PVIFSARRVA AVGANGETRN GKRRGGGGSG RRKYAAKLSK IEE
101: MRSGGSCGRD KCRCRRKCVS PVIFSARRVA AVGANGETRN GKRRGGGGSG RRKYAAKLSK IEE
Arabidopsis Description
HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q680G2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.