Factsheet for Bra017789.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra012351.1-P
Bra018296.1-P
Bra024548.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37240.1	Bra012351.1-P	AT1G22920.1	21798944
AT4G37240.1	Bra024548.1-P	AT1G22920.1	21798944
AT4G37240.1	Bra000214.1-P	AT2G41090.1	17360592
AT4G37240.1	Bra000214.1-P	AT2G41100.1	17360592
AT4G37240.1	Bra018296.1-P	AT3G51920.1	17360592
AT4G37240.1	Bra033467.1-P	AT3G51920.1	17360592
AT4G37240.1	Bra039723.1-P	AT4G14640.1	17360592
AT4G37240.1	Bra002368.1-P	AT5G21274.1	17360592
AT4G37240.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42708	Canola	nucleus	97.66	97.66
CDX72612	Canola	nucleus	97.08	97.08
AT4G37240.1	Thale cress	cytosol, nucleus, plastid	81.29	82.74
Bra010578.1-P	Field mustard	cytosol, nucleus, plastid	71.34	81.33
Bra011715.1-P	Field mustard	nucleus	81.29	79.43
Bra032151.1-P	Field mustard	cytosol	67.25	70.55
Bra039208.1-P	Field mustard	cytosol	51.46	63.31
Solyc02g089990.1.1	Tomato	nucleus	53.8	57.14
PGSC0003DMT400026013	Potato	cytosol, nucleus, plastid	53.8	56.79
Bra036862.1-P	Field mustard	cytosol	49.12	56.76
Bra012887.1-P	Field mustard	cytosol, nucleus, plastid	50.88	55.77
KRH76906	Soybean	cytosol	51.46	55.35
Bra012084.1-P	Field mustard	cytosol	45.03	55.0
PGSC0003DMT400059007	Potato	cytosol, nucleus, plastid	46.2	54.48
Bra037163.1-P	Field mustard	cytosol	49.12	54.19
Solyc03g044860.1.1	Tomato	cytosol	46.2	54.11
Bra031814.1-P	Field mustard	cytosol	47.37	53.64
KRH28562	Soybean	cytosol	50.29	52.76
PGSC0003DMT400007187	Potato	cytosol	45.03	50.66
Solyc02g065430.1.1	Tomato	cytosol	44.44	50.0
VIT_03s0063g01940.t01	Wine grape	cytosol	50.88	50.0
GSMUA_Achr2P08730_001	Banana	cytosol	47.37	48.8
GSMUA_Achr7P27420_001	Banana	cytosol	46.78	48.48
KRH69989	Soybean	cytosol	43.27	44.85
KRH08345	Soybean	cytosol	42.69	42.69
TraesCS5A01G379900.1	Wheat	plastid	32.75	33.53
Os03t0740200-00	Rice	plastid	33.33	33.53
TraesCS5B01G383500.1	Wheat	plastid	33.33	33.14
TraesCS5D01G389400.1	Wheat	plastid	32.75	33.14
Zm00001d013311_P001	Maize	plastid	30.41	32.5
TraesCS5A01G404200.1	Wheat	cytosol	32.75	31.82
HORVU5Hr1G098280.1	Barley	cytosol	32.75	31.82
HORVU5Hr1G098290.1	Barley	cytosol	32.16	31.25
TraesCS5D01G414200.1	Wheat	cytosol	32.16	31.25
TraesCS5A01G404100.1	Wheat	cytosol	32.16	31.25
Zm00001d034190_P001	Maize	cytosol	32.75	30.77
TraesCS5D01G414000.1	Wheat	cytosol	32.16	30.73
Zm00001d033943_P001	Maize	plastid	29.82	30.72
Os03t0768900-00	Rice	cytosol	31.58	30.68
TraesCS5B01G408800.1	Wheat	cytosol	31.58	30.68
KXG37596	Sorghum	cytosol, nucleus, plastid	29.82	30.54
EER93387	Sorghum	cytosol	33.33	30.32
TraesCS5D01G414300.1	Wheat	cytosol	30.99	30.11
TraesCS1D01G444800.1	Wheat	cytosol, plastid	32.75	30.11
TraesCS1A01G436300.1	Wheat	mitochondrion	33.33	30.0
TraesCS5A01G404000.1	Wheat	cytosol	30.99	29.61
TraesCS5D01G414100.1	Wheat	cytosol	30.99	29.61
HORVU1Hr1G094330.1	Barley	cytosol	32.16	29.41
TraesCS5B01G408700.1	Wheat	cytosol	31.58	29.35
TraesCS2B01G276100.1	Wheat	cytosol, extracellular, plastid	32.16	29.26
TraesCS5B01G409000.1	Wheat	cytosol	29.24	29.24
TraesCS2D01G257800.1	Wheat	plastid	32.75	29.17
TraesCS1A01G436400.1	Wheat	plastid	32.16	29.1
EER95817	Sorghum	nucleus	32.75	28.87
TraesCS1B01G471500.1	Wheat	mitochondrion	30.99	28.65
TraesCS2A01G266000.1	Wheat	plastid	32.16	28.65
Bra016439.1-P	Field mustard	cytosol	35.09	28.57
HORVU5Hr1G093900.1	Barley	plastid	29.24	28.57
Bra025866.1-P	Field mustard	cytosol	35.09	28.3
TraesCS2D01G257700.1	Wheat	mitochondrion, nucleus, plastid	30.99	28.19
Zm00001d013178_P001	Maize	cytosol	30.41	27.96
TraesCS1D01G444700.1	Wheat	cytosol, extracellular, peroxisome, plastid	30.41	27.96
Os07t0123100-00	Rice	extracellular	33.33	27.8
TraesCS2B01G276000.1	Wheat	cytosol, nucleus, plastid	30.41	27.66
Bra012264.1-P	Field mustard	cytosol	33.33	27.54
HORVU2Hr1G061800.1	Barley	plastid	30.41	27.37
TraesCS2A01G266100.1	Wheat	cytosol	26.32	27.27
Zm00001d018717_P001	Maize	cytosol	30.41	26.8
HORVU5Hr1G098260.1	Barley	cytosol, mitochondrion	33.33	26.64
Bra008267.1-P	Field mustard	nucleus	32.75	26.42
Zm00001d007974_P001	Maize	nucleus	29.24	25.91
Bra003714.1-P	Field mustard	cytosol	30.99	25.24
TraesCS5A01G403900.1	Wheat	plastid	32.16	23.61
HORVU2Hr1G061850.1	Barley	extracellular, plastid	21.05	18.18

Protein Annotations

EnsemblPlants:Bra017789.1	EnsemblPlants:Bra017789.1-P	EnsemblPlantsGene:Bra017789	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF17
PFAM:PF14009	SEG:seg	UniParc:UPI0002540C66	UniProt:M4DMQ4	MapMan:35.2	:

Description

AT4G37240 (E=2e-047) | unknown protein

Coordinates

chrA03:-:30495095..30495610

Molecular Weight (calculated)

18211.6 Da

IEP (calculated)

8.192

GRAVY (calculated)

-0.354

Length

171 amino acids

Sequence
(BLAST)

001: MGICSSSEST QVATAKLILQ DGRMIEFTSP VKVGYVLQKY PMCFICNSDD MDFDDAVSAI SADEELQLGQ IYFALPLRWL REPLRADEMA ALAVKASAAL
101: MQSGGGGGSC RRKRVDPIVA GKSRKRFGSG DDTVGSGGGR RKGRDGDGGG SSSNSGRRRK CYAAELSAIE E

Best Arabidopsis Sequence Match ( AT4G37240.1 )
(BLAST)

001: MGICSSSEST QVATAKLILQ DGRMMEFANP VKVGYVLLKY PMCFICNSDD MDFDDAVAAI SADEELQLGQ IYFALPLCWL RQPLKAEEMA ALAVKASSAL
101: MRGGGGGCRR KCVEPIVSDK LRMRVGSGDD TVGSGSGRRK VRNGDGGGSV SSSRRRKCYA AELSTIDE

Arabidopsis Description

HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q8LE56]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.