Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG37596 | Sorghum | cytosol, nucleus, plastid | 90.96 | 90.42 |
| Zm00001d013311_P001 | Maize | plastid | 77.71 | 80.62 |
| Os03t0740200-00 | Rice | plastid | 78.92 | 77.06 |
| TraesCS5A01G379900.1 | Wheat | plastid | 74.7 | 74.25 |
| TraesCS5D01G389400.1 | Wheat | plastid | 74.7 | 73.37 |
| TraesCS5B01G383500.1 | Wheat | plastid | 75.9 | 73.26 |
| HORVU5Hr1G093900.1 | Barley | plastid | 69.88 | 66.29 |
| Zm00001d034190_P001 | Maize | cytosol | 48.8 | 44.51 |
| Zm00001d013178_P001 | Maize | cytosol | 48.19 | 43.01 |
| GSMUA_Achr7P27420_001 | Banana | cytosol | 39.76 | 40.0 |
| GSMUA_Achr2P08730_001 | Banana | cytosol | 38.55 | 38.55 |
| Solyc02g089990.1.1 | Tomato | nucleus | 36.14 | 37.27 |
| PGSC0003DMT400026013 | Potato | cytosol, nucleus, plastid | 36.14 | 37.04 |
| CDY45243 | Canola | cytosol | 30.12 | 35.71 |
| Bra012084.1-P | Field mustard | cytosol | 30.12 | 35.71 |
| Zm00001d018717_P001 | Maize | cytosol | 41.57 | 35.57 |
| PGSC0003DMT400059007 | Potato | cytosol, nucleus, plastid | 30.72 | 35.17 |
| Solyc03g044860.1.1 | Tomato | cytosol | 30.72 | 34.93 |
| CDX81387 | Canola | cytosol | 31.93 | 34.19 |
| VIT_00s0207g00140.t01 | Wine grape | cytosol | 33.13 | 33.74 |
| VIT_00s0207g00180.t01 | Wine grape | cytosol | 33.13 | 33.74 |
| Zm00001d007974_P001 | Maize | nucleus | 39.16 | 33.68 |
| Solyc02g065430.1.1 | Tomato | cytosol | 30.72 | 33.55 |
| CDY18612 | Canola | cytosol | 30.72 | 32.9 |
| Bra037163.1-P | Field mustard | cytosol | 30.72 | 32.9 |
| PGSC0003DMT400007187 | Potato | cytosol | 30.12 | 32.89 |
| AT3G50800.1 | Thale cress | cytosol, nucleus, plastid | 30.12 | 32.89 |
| KRH76906 | Soybean | cytosol | 31.33 | 32.7 |
| CDX77946 | Canola | cytosol | 28.92 | 32.43 |
| AT5G66580.1 | Thale cress | cytosol | 30.12 | 32.05 |
| CDY55087 | Canola | cytosol | 28.92 | 31.79 |
| Bra031814.1-P | Field mustard | cytosol | 28.92 | 31.79 |
| Bra036862.1-P | Field mustard | cytosol | 28.31 | 31.76 |
| CDY28982 | Canola | nucleus | 29.52 | 31.41 |
| Bra012887.1-P | Field mustard | cytosol, nucleus, plastid | 29.52 | 31.41 |
| CDX90684 | Canola | cytosol, nucleus, plastid | 29.52 | 31.41 |
| CDX73789 | Canola | cytosol | 28.92 | 31.37 |
| KRH28562 | Soybean | cytosol | 30.72 | 31.29 |
| CDY28078 | Canola | cytosol | 29.52 | 30.62 |
| Bra017789.1-P | Field mustard | nucleus | 30.72 | 29.82 |
| CDY42708 | Canola | nucleus | 30.12 | 29.24 |
| CDX72612 | Canola | nucleus | 30.12 | 29.24 |
| AT4G37240.1 | Thale cress | cytosol, nucleus, plastid | 29.52 | 29.17 |
| VIT_03s0063g01940.t01 | Wine grape | cytosol | 30.12 | 28.74 |
| CDY24764 | Canola | cytosol, nucleus, plastid | 29.52 | 28.32 |
| CDX69254 | Canola | cytosol | 30.12 | 28.09 |
| CDX75606 | Canola | nucleus | 29.52 | 28.0 |
| Bra011715.1-P | Field mustard | nucleus | 29.52 | 28.0 |
| CDY22462 | Canola | cytosol, nucleus, plastid | 28.92 | 27.75 |
| AT2G23690.1 | Thale cress | cytosol | 27.11 | 27.61 |
| CDX89594 | Canola | cytosol | 27.11 | 27.61 |
| Bra032151.1-P | Field mustard | cytosol | 26.51 | 26.99 |
| CDY39665 | Canola | cytosol | 26.51 | 26.99 |
| CDY46066 | Canola | cytosol | 26.51 | 26.99 |
| CDX76853 | Canola | cytosol | 26.51 | 26.83 |
| Bra010578.1-P | Field mustard | cytosol, nucleus, plastid | 24.1 | 26.67 |
| KRH08345 | Soybean | cytosol | 27.11 | 26.32 |
| Zm00001d020967_P001 | Maize | plastid | 36.75 | 26.07 |
| KRH69989 | Soybean | cytosol | 25.9 | 26.06 |
| Bra039208.1-P | Field mustard | cytosol | 21.08 | 25.18 |
| Zm00001d046687_P001 | Maize | plastid | 30.72 | 24.4 |
| Zm00001d036787_P001 | Maize | plastid | 29.52 | 22.58 |
| Zm00001d015867_P001 | Maize | plastid | 28.31 | 21.96 |
| Zm00001d020968_P001 | Maize | plastid | 29.52 | 21.59 |
Protein Annotations
| EnsemblPlants:Zm00001d033943_P001 | EnsemblPlants:Zm00001d033943_T001 | EnsemblPlantsGene:Zm00001d033943 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF27 |
| PFAM:PF14009 | ProteinID:ONM09010.1 | SEG:seg | UniParc:UPI000220D0B2 | UniProt:A0A1D6L3I9 | MapMan:35.2 |
Description
No Description!
Coordinates
chr1:+:279336319..279336819
Molecular Weight (calculated)
16465.6 Da
IEP (calculated)
8.509
GRAVY (calculated)
0.098
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MGACNSCEAT AVAAAPGPAT AEARVVLADG ALRRFPGGTR ASQAVKAAAG GAAPTASWFL CSADGLELGG AVAPVRPEEA LQPGQLYFVL PAAMRRRPLQ
101: AEEMAALAIR ASAALAGDHD GPLVFPEAAA AAAAGAGARC GKACRRSRRG GSRGRDFAPD LGAIAE
101: AEEMAALAIR ASAALAGDHD GPLVFPEAAA AAAAGAGARC GKACRRSRRG GSRGRDFAPD LGAIAE
001: MGACASRESL RSDSAKLILL DGTLQEFSSP VKVWQILQKN PTSFVCNSDE MDFDDAVSAV AGNEELRSGQ LYFVLPLTWL NHPLRAEEMA ALAVKASSAL
101: TKSGGVGWVS GDDDVTTSEK TYQKKNIAGV KTNGGGGRGC GKGKRRFTAN LSTIAE
101: TKSGGVGWVS GDDDVTTSEK TYQKKNIAGV KTNGGGGRGC GKGKRRFTAN LSTIAE
Arabidopsis Description
Uncharacterized protein At5g66580 [Source:UniProtKB/TrEMBL;Acc:Q9FJY2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.