Factsheet for Zm00001d013178_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d005003_P002
Zm00001d008278_P001
Zm00001d010649_P001
Zm00001d028948_P001
Zm00001d033980_P001
Zm00001d038543_P004
Zm00001d038545_P001
Zm00001d041430_P001
Zm00001d043144_P001
Zm00001d047597_P001
Zm00001d052415_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37240.1	Zm00001d002027_P002	AT1G22920.1	21798944
AT4G37240.1	Zm00001d005003_P002	AT2G41090.1	17360592
AT4G37240.1	Zm00001d008278_P001	AT2G41090.1	17360592
AT4G37240.1	Zm00001d010649_P001	AT2G41090.1	17360592
AT4G37240.1	Zm00001d028948_P001	AT2G41090.1	17360592
AT4G37240.1	Zm00001d038543_P004	AT2G41090.1	17360592
AT4G37240.1	Zm00001d038545_P001	AT2G41090.1	17360592
AT4G37240.1	Zm00001d041430_P001	AT2G41090.1	17360592
AT4G37240.1	Zm00001d043144_P001	AT2G41090.1	17360592
AT4G37240.1	Zm00001d047597_P001	AT2G41090.1	17360592
AT4G37240.1	Zm00001d052415_P001	AT2G41090.1	17360592
AT4G37240.1	Zm00001d005003_P002	AT2G41100.1	17360592
AT4G37240.1	Zm00001d008278_P001	AT2G41100.1	17360592
AT4G37240.1	Zm00001d010649_P001	AT2G41100.1	17360592
AT4G37240.1	Zm00001d028948_P001	AT2G41100.1	17360592
AT4G37240.1	Zm00001d038543_P004	AT2G41100.1	17360592
AT4G37240.1	Zm00001d038545_P001	AT2G41100.1	17360592
AT4G37240.1	Zm00001d041430_P001	AT2G41100.1	17360592
AT4G37240.1	Zm00001d043144_P001	AT2G41100.1	17360592
AT4G37240.1	Zm00001d047597_P001	AT2G41100.1	17360592
AT4G37240.1	Zm00001d052415_P001	AT2G41100.1	17360592
AT4G37240.1	Zm00001d033980_P001	AT4G14640.1	17360592
AT4G37240.1	Zm00001d005003_P002	AT5G21274.1	17360592
AT4G37240.1	Zm00001d008278_P001	AT5G21274.1	17360592
AT4G37240.1	Zm00001d010649_P001	AT5G21274.1	17360592
AT4G37240.1	Zm00001d028948_P001	AT5G21274.1	17360592
AT4G37240.1	Zm00001d038543_P004	AT5G21274.1	17360592
AT4G37240.1	Zm00001d038545_P001	AT5G21274.1	17360592
AT4G37240.1	Zm00001d041430_P001	AT5G21274.1	17360592
AT4G37240.1	Zm00001d043144_P001	AT5G21274.1	17360592
AT4G37240.1	Zm00001d047597_P001	AT5G21274.1	17360592
AT4G37240.1	Zm00001d052415_P001	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034190_P001	Maize	cytosol	83.33	85.16
EER93387	Sorghum	cytosol	84.41	83.51
Os03t0768900-00	Rice	cytosol	66.13	69.89
HORVU5Hr1G098290.1	Barley	cytosol	62.37	65.91
TraesCS5A01G404200.1	Wheat	cytosol	61.83	65.34
TraesCS5D01G414000.1	Wheat	cytosol	62.37	64.8
TraesCS5D01G414300.1	Wheat	cytosol	61.29	64.77
HORVU5Hr1G098280.1	Barley	cytosol	60.75	64.2
TraesCS5D01G414200.1	Wheat	cytosol	60.75	64.2
TraesCS5D01G414100.1	Wheat	cytosol	60.75	63.13
TraesCS5A01G404000.1	Wheat	cytosol	60.75	63.13
TraesCS5B01G408700.1	Wheat	cytosol	62.37	63.04
TraesCS5B01G409000.1	Wheat	cytosol	57.53	62.57
TraesCS5B01G408800.1	Wheat	cytosol	59.14	62.5
TraesCS5A01G404100.1	Wheat	cytosol	59.14	62.5
HORVU5Hr1G098260.1	Barley	cytosol, mitochondrion	57.53	50.0
TraesCS5A01G403900.1	Wheat	plastid	62.37	49.79
Zm00001d033943_P001	Maize	plastid	43.01	48.19
Zm00001d013311_P001	Maize	plastid	41.4	48.12
Zm00001d018717_P001	Maize	cytosol	47.85	45.88
Zm00001d007974_P001	Maize	nucleus	43.01	41.45
GSMUA_Achr2P08730_001	Banana	cytosol	35.48	39.76
GSMUA_Achr7P27420_001	Banana	cytosol	34.95	39.39
Solyc02g089990.1.1	Tomato	nucleus	32.8	37.89
PGSC0003DMT400026013	Potato	cytosol, nucleus, plastid	32.8	37.65
PGSC0003DMT400059007	Potato	cytosol, nucleus, plastid	28.49	36.55
Solyc03g044860.1.1	Tomato	cytosol	28.49	36.3
CDY45243	Canola	cytosol	26.34	35.0
KRH76906	Soybean	cytosol	29.57	34.59
VIT_00s0207g00140.t01	Wine grape	cytosol	29.57	33.74
VIT_00s0207g00180.t01	Wine grape	cytosol	29.57	33.74
CDX81387	Canola	cytosol	27.96	33.55
PGSC0003DMT400007187	Potato	cytosol	26.88	32.89
Solyc02g065430.1.1	Tomato	cytosol	26.88	32.89
Bra012084.1-P	Field mustard	cytosol	24.73	32.86
KRH28562	Soybean	cytosol	28.49	32.52
Bra037163.1-P	Field mustard	cytosol	26.88	32.26
CDY18612	Canola	cytosol	26.88	32.26
AT3G50800.1	Thale cress	cytosol, nucleus, plastid	26.34	32.24
CDX77946	Canola	cytosol	25.27	31.76
AT4G37240.1	Thale cress	cytosol, nucleus, plastid	28.49	31.55
AT5G66580.1	Thale cress	cytosol	26.34	31.41
CDY46066	Canola	cytosol	27.42	31.29
CDY55087	Canola	cytosol	25.27	31.13
Bra031814.1-P	Field mustard	cytosol	25.27	31.13
Bra036862.1-P	Field mustard	cytosol	24.73	31.08
VIT_03s0063g01940.t01	Wine grape	cytosol	29.03	31.03
KRH08345	Soybean	cytosol	28.49	30.99
CDY28982	Canola	nucleus	25.81	30.77
CDX73789	Canola	cytosol	25.27	30.72
CDY39665	Canola	cytosol	26.88	30.67
Bra032151.1-P	Field mustard	cytosol	26.88	30.67
CDY24764	Canola	cytosol, nucleus, plastid	28.49	30.64
CDY22462	Canola	cytosol, nucleus, plastid	28.49	30.64
CDX76853	Canola	cytosol	26.88	30.49
Bra017789.1-P	Field mustard	nucleus	27.96	30.41
CDX90684	Canola	cytosol, nucleus, plastid	25.27	30.13
Bra012887.1-P	Field mustard	cytosol, nucleus, plastid	25.27	30.13
AT2G23690.1	Thale cress	cytosol	26.34	30.06
CDX72612	Canola	nucleus	27.42	29.82
CDY42708	Canola	nucleus	27.42	29.82
KRH69989	Soybean	cytosol	26.34	29.7
Bra039208.1-P	Field mustard	cytosol	22.04	29.5
CDX89594	Canola	cytosol	25.81	29.45
Bra010578.1-P	Field mustard	cytosol, nucleus, plastid	23.66	29.33
CDY28078	Canola	cytosol	24.73	28.75
CDX69254	Canola	cytosol	26.34	27.53
Bra011715.1-P	Field mustard	nucleus	25.81	27.43
CDX75606	Canola	nucleus	25.81	27.43
Zm00001d046687_P001	Maize	plastid	28.49	25.36
Zm00001d036787_P001	Maize	plastid	28.49	24.42
Zm00001d020967_P001	Maize	plastid	30.65	24.36
Zm00001d015867_P001	Maize	plastid	27.96	24.3
Zm00001d020968_P001	Maize	plastid	27.96	22.91

Protein Annotations

EMBL:EU954684	EnsemblPlants:Zm00001d013178_P001	EnsemblPlants:Zm00001d013178_T001	EnsemblPlantsGene:Zm00001d013178	EntrezGene:100275173	InterPro:DUF4228_plant
PANTHER:PTHR33052	PANTHER:PTHR33052:SF63	PFAM:PF14009	ProteinID:AQK62606.1	SEG:seg	UniParc:UPI000182B09E
UniProt:B6SPL9	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr5:-:5981955..5982515

Molecular Weight (calculated)

19126.7 Da

IEP (calculated)

7.925

GRAVY (calculated)

0.038

Length

186 amino acids

Sequence
(BLAST)

001: MGICVSCDAA DEGAATAARV VLPSGELREY APPATAAEAL QAAGEGSSWL LCDADGMAFE GPVAVAAVAP GSELQAGQIY FVLPAEMQRR RLARAEVAAL
101: AVRASSALAR AAALAQPSSP CRRRRRGAAA QLVFPVPEEE FAAADPVASK PAAAVVAHRK RRVAYRGGSG RASRFSPDLT AIPESE

Best Arabidopsis Sequence Match ( AT1G21010.1 )
(BLAST)

001: MGICVSFRRE DSNSSPTVKI VTVNGDLREY NVPVIASQVL EAESAAAYSS SSSSRPSSYF ICDSDSLYYD DFIPAIKSEE PLQADQIYFV LPISKRQSRL
101: TASDMAALAV KASVAIQNSV KKESRRRKKV RISPVMMLTG SNDSVNGNGS ETTVKKGRPF VSKTAPVKAS SGINRSGSVR NLRRYTSKRA KLAVRSFRLK
201: LSTIYEGSVV

Arabidopsis Description

At1g21010 [Source:UniProtKB/TrEMBL;Acc:Q7XJ58]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.