Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P08730_001 | Banana | cytosol | 66.06 | 65.66 |
| Solyc02g089990.1.1 | Tomato | nucleus | 52.12 | 53.42 |
| VIT_00s0207g00140.t01 | Wine grape | cytosol | 52.12 | 52.76 |
| VIT_00s0207g00180.t01 | Wine grape | cytosol | 52.12 | 52.76 |
| PGSC0003DMT400026013 | Potato | cytosol, nucleus, plastid | 51.52 | 52.47 |
| VIT_03s0063g01940.t01 | Wine grape | cytosol | 53.33 | 50.57 |
| KRH76906 | Soybean | cytosol | 48.48 | 50.31 |
| CDX89594 | Canola | cytosol | 47.88 | 48.47 |
| CDY39665 | Canola | cytosol | 47.27 | 47.85 |
| KRH28562 | Soybean | cytosol | 47.27 | 47.85 |
| Bra032151.1-P | Field mustard | cytosol | 47.27 | 47.85 |
| AT2G23690.1 | Thale cress | cytosol | 46.67 | 47.24 |
| PGSC0003DMT400059007 | Potato | cytosol, nucleus, plastid | 41.21 | 46.9 |
| CDY42708 | Canola | nucleus | 48.48 | 46.78 |
| Bra017789.1-P | Field mustard | nucleus | 48.48 | 46.78 |
| CDX77946 | Canola | cytosol | 41.82 | 46.62 |
| Solyc03g044860.1.1 | Tomato | cytosol | 41.21 | 46.58 |
| CDY22462 | Canola | cytosol, nucleus, plastid | 48.48 | 46.24 |
| CDX72612 | Canola | nucleus | 47.88 | 46.2 |
| CDY46066 | Canola | cytosol | 45.45 | 46.01 |
| Bra036862.1-P | Field mustard | cytosol | 41.21 | 45.95 |
| CDY45243 | Canola | cytosol | 38.79 | 45.71 |
| CDY24764 | Canola | cytosol, nucleus, plastid | 47.88 | 45.66 |
| AT4G37240.1 | Thale cress | cytosol, nucleus, plastid | 46.06 | 45.24 |
| CDX76853 | Canola | cytosol | 44.85 | 45.12 |
| CDX73789 | Canola | cytosol | 41.82 | 45.1 |
| Bra012084.1-P | Field mustard | cytosol | 38.18 | 45.0 |
| Solyc02g065430.1.1 | Tomato | cytosol | 41.21 | 44.74 |
| PGSC0003DMT400007187 | Potato | cytosol | 41.21 | 44.74 |
| AT3G50800.1 | Thale cress | cytosol, nucleus, plastid | 40.61 | 44.08 |
| CDY55087 | Canola | cytosol | 40.0 | 43.71 |
| Bra031814.1-P | Field mustard | cytosol | 40.0 | 43.71 |
| CDY28982 | Canola | nucleus | 41.21 | 43.59 |
| CDX90684 | Canola | cytosol, nucleus, plastid | 41.21 | 43.59 |
| Bra012887.1-P | Field mustard | cytosol, nucleus, plastid | 41.21 | 43.59 |
| CDY18612 | Canola | cytosol | 40.61 | 43.23 |
| Bra037163.1-P | Field mustard | cytosol | 40.61 | 43.23 |
| AT5G66580.1 | Thale cress | cytosol | 40.61 | 42.95 |
| CDX81387 | Canola | cytosol | 40.0 | 42.58 |
| Bra039208.1-P | Field mustard | cytosol | 35.76 | 42.45 |
| CDX75606 | Canola | nucleus | 44.85 | 42.29 |
| Bra011715.1-P | Field mustard | nucleus | 44.85 | 42.29 |
| Bra010578.1-P | Field mustard | cytosol, nucleus, plastid | 38.18 | 42.0 |
| CDX69254 | Canola | cytosol | 44.85 | 41.57 |
| TraesCS5A01G379900.1 | Wheat | plastid | 41.82 | 41.32 |
| TraesCS5B01G383500.1 | Wheat | plastid | 43.03 | 41.28 |
| TraesCS5D01G389400.1 | Wheat | plastid | 41.82 | 40.83 |
| Os03t0740200-00 | Rice | plastid | 41.82 | 40.59 |
| CDY28078 | Canola | cytosol | 38.79 | 40.0 |
| Zm00001d033943_P001 | Maize | plastid | 40.0 | 39.76 |
| KXG37596 | Sorghum | cytosol, nucleus, plastid | 39.39 | 38.92 |
| KRH69989 | Soybean | cytosol | 38.79 | 38.79 |
| Os03t0768900-00 | Rice | cytosol | 40.61 | 38.07 |
| Zm00001d013311_P001 | Maize | plastid | 36.36 | 37.5 |
| HORVU5Hr1G098280.1 | Barley | cytosol | 39.39 | 36.93 |
| TraesCS5D01G414200.1 | Wheat | cytosol | 39.39 | 36.93 |
| TraesCS5A01G404200.1 | Wheat | cytosol | 39.39 | 36.93 |
| HORVU5Hr1G093900.1 | Barley | plastid | 38.79 | 36.57 |
| TraesCS5A01G404100.1 | Wheat | cytosol | 38.79 | 36.36 |
| TraesCS5D01G414300.1 | Wheat | cytosol | 38.79 | 36.36 |
| HORVU5Hr1G098290.1 | Barley | cytosol | 38.79 | 36.36 |
| TraesCS5D01G414000.1 | Wheat | cytosol | 39.39 | 36.31 |
| Zm00001d034190_P001 | Maize | cytosol | 40.0 | 36.26 |
| KRH08345 | Soybean | cytosol | 37.58 | 36.26 |
| TraesCS5B01G408800.1 | Wheat | cytosol | 38.18 | 35.8 |
| TraesCS5B01G409000.1 | Wheat | cytosol | 36.36 | 35.09 |
| Zm00001d013178_P001 | Maize | cytosol | 39.39 | 34.95 |
| TraesCS5A01G404000.1 | Wheat | cytosol | 37.58 | 34.64 |
| TraesCS5D01G414100.1 | Wheat | cytosol | 37.58 | 34.64 |
| EER93387 | Sorghum | cytosol | 38.79 | 34.04 |
| TraesCS5B01G408700.1 | Wheat | cytosol | 37.58 | 33.7 |
| TraesCS2A01G266000.1 | Wheat | plastid | 38.18 | 32.81 |
| TraesCS1A01G436300.1 | Wheat | mitochondrion | 37.58 | 32.63 |
| TraesCS1A01G436400.1 | Wheat | plastid | 36.97 | 32.28 |
| TraesCS1D01G444800.1 | Wheat | cytosol, plastid | 36.36 | 32.26 |
| HORVU1Hr1G094330.1 | Barley | cytosol | 36.36 | 32.09 |
| TraesCS2B01G276100.1 | Wheat | cytosol, extracellular, plastid | 36.36 | 31.91 |
| HORVU2Hr1G061800.1 | Barley | plastid | 36.36 | 31.58 |
| TraesCS2A01G266100.1 | Wheat | cytosol | 31.52 | 31.52 |
| TraesCS2D01G257700.1 | Wheat | mitochondrion, nucleus, plastid | 35.76 | 31.38 |
| TraesCS2D01G257800.1 | Wheat | plastid | 36.36 | 31.25 |
| TraesCS1D01G444700.1 | Wheat | cytosol, extracellular, peroxisome, plastid | 35.15 | 31.18 |
| GSMUA_Achr9P12270_001 | Banana | cytosol | 34.55 | 30.98 |
| TraesCS2B01G276000.1 | Wheat | cytosol, nucleus, plastid | 35.15 | 30.85 |
| Zm00001d018717_P001 | Maize | cytosol | 35.76 | 30.41 |
| TraesCS1B01G471500.1 | Wheat | mitochondrion | 33.94 | 30.27 |
| Os07t0123100-00 | Rice | extracellular | 37.58 | 30.24 |
| EER95817 | Sorghum | nucleus | 34.55 | 29.38 |
| TraesCS5A01G403900.1 | Wheat | plastid | 39.39 | 27.9 |
| HORVU5Hr1G098260.1 | Barley | cytosol, mitochondrion | 35.76 | 27.57 |
| Zm00001d007974_P001 | Maize | nucleus | 31.52 | 26.94 |
| HORVU2Hr1G061850.1 | Barley | extracellular, plastid | 23.64 | 19.7 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P27420_001 | EnsemblPlants:GSMUA_Achr7T27420_001 | EnsemblPlantsGene:GSMUA_Achr7G27420_001 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF17 |
| PFAM:PF14009 | SEG:seg | UniParc:UPI000295127A | UniProt:M0TL78 | MapMan:35.2 | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_207.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr7G27420_001]
Coordinates
chr7:+:28440284..28441057
Molecular Weight (calculated)
17577.0 Da
IEP (calculated)
7.869
GRAVY (calculated)
-0.214
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MGICSSCDAT TVVAATATAK LVLQDGKLQE FARPVKASHV LQKDPNCFVC SADDMGFDDF VSPVNADDEL QPGQLYFLLP VSMLRRPLHA EEMAALAVKA
101: SAAIMDSDGY HCRGGPVGRL VFPEASADGI RSAVAPAQRR RRGPSSKRRG GKGRDFKSEL GGIPE
101: SAAIMDSDGY HCRGGPVGRL VFPEASADGI RSAVAPAQRR RRGPSSKRRG GKGRDFKSEL GGIPE
001: MGICSSSEST QVATAKLILQ DGRMMEFANP VKVGYVLLKY PMCFICNSDD MDFDDAVAAI SADEELQLGQ IYFALPLCWL RQPLKAEEMA ALAVKASSAL
101: MRGGGGGCRR KCVEPIVSDK LRMRVGSGDD TVGSGSGRRK VRNGDGGGSV SSSRRRKCYA AELSTIDE
101: MRGGGGGCRR KCVEPIVSDK LRMRVGSGDD TVGSGSGRRK VRNGDGGGSV SSSRRRKCYA AELSTIDE
Arabidopsis Description
HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q8LE56]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.