Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d018717_P001 | Maize | cytosol | 70.62 | 70.62 |
| TraesCS2B01G276000.1 | Wheat | cytosol, nucleus, plastid | 56.7 | 58.51 |
| TraesCS2D01G257700.1 | Wheat | mitochondrion, nucleus, plastid | 56.19 | 57.98 |
| TraesCS2A01G266100.1 | Wheat | cytosol | 48.45 | 56.97 |
| HORVU2Hr1G061800.1 | Barley | plastid | 55.67 | 56.84 |
| TraesCS2B01G276100.1 | Wheat | cytosol, extracellular, plastid | 54.64 | 56.38 |
| TraesCS2D01G257800.1 | Wheat | plastid | 55.67 | 56.25 |
| TraesCS2A01G266000.1 | Wheat | plastid | 55.67 | 56.25 |
| TraesCS1A01G436400.1 | Wheat | plastid | 53.61 | 55.03 |
| TraesCS1A01G436300.1 | Wheat | mitochondrion | 53.61 | 54.74 |
| TraesCS1D01G444700.1 | Wheat | cytosol, extracellular, peroxisome, plastid | 52.06 | 54.3 |
| HORVU1Hr1G094330.1 | Barley | cytosol | 52.06 | 54.01 |
| Zm00001d007974_P001 | Maize | nucleus | 52.58 | 52.85 |
| TraesCS1D01G444800.1 | Wheat | cytosol, plastid | 49.48 | 51.61 |
| TraesCS1B01G471500.1 | Wheat | mitochondrion | 48.97 | 51.35 |
| Os07t0123100-00 | Rice | extracellular | 53.61 | 50.73 |
| EER93387 | Sorghum | cytosol | 45.88 | 47.34 |
| KXG37596 | Sorghum | cytosol, nucleus, plastid | 35.05 | 40.72 |
| CDY45243 | Canola | cytosol | 26.29 | 36.43 |
| CDY28982 | Canola | nucleus | 28.87 | 35.9 |
| GSMUA_Achr2P08730_001 | Banana | cytosol | 29.9 | 34.94 |
| CDX81387 | Canola | cytosol | 27.84 | 34.84 |
| GSMUA_Achr7P27420_001 | Banana | cytosol | 29.38 | 34.55 |
| CDX77946 | Canola | cytosol | 26.29 | 34.46 |
| Bra012084.1-P | Field mustard | cytosol | 24.74 | 34.29 |
| CDX73789 | Canola | cytosol | 26.8 | 33.99 |
| CDX90684 | Canola | cytosol, nucleus, plastid | 27.32 | 33.97 |
| Bra012887.1-P | Field mustard | cytosol, nucleus, plastid | 27.32 | 33.97 |
| Bra036862.1-P | Field mustard | cytosol | 25.77 | 33.78 |
| CDY55087 | Canola | cytosol | 26.29 | 33.77 |
| Bra031814.1-P | Field mustard | cytosol | 26.29 | 33.77 |
| CDY18612 | Canola | cytosol | 26.8 | 33.55 |
| Bra037163.1-P | Field mustard | cytosol | 26.8 | 33.55 |
| AT5G66580.1 | Thale cress | cytosol | 26.8 | 33.33 |
| AT3G50800.1 | Thale cress | cytosol, nucleus, plastid | 25.77 | 32.89 |
| Bra017789.1-P | Field mustard | nucleus | 28.87 | 32.75 |
| CDX72612 | Canola | nucleus | 28.87 | 32.75 |
| Solyc02g089990.1.1 | Tomato | nucleus | 26.8 | 32.3 |
| CDY42708 | Canola | nucleus | 28.35 | 32.16 |
| PGSC0003DMT400026013 | Potato | cytosol, nucleus, plastid | 26.8 | 32.1 |
| AT2G23690.1 | Thale cress | cytosol | 26.8 | 31.9 |
| CDY28078 | Canola | cytosol | 26.29 | 31.88 |
| AT4G37240.1 | Thale cress | cytosol, nucleus, plastid | 27.32 | 31.55 |
| KRH28562 | Soybean | cytosol | 26.29 | 31.29 |
| Bra032151.1-P | Field mustard | cytosol | 26.29 | 31.29 |
| CDY39665 | Canola | cytosol | 26.29 | 31.29 |
| CDY46066 | Canola | cytosol | 26.29 | 31.29 |
| KRH76906 | Soybean | cytosol | 25.26 | 30.82 |
| VIT_00s0207g00140.t01 | Wine grape | cytosol | 25.77 | 30.67 |
| PGSC0003DMT400059007 | Potato | cytosol, nucleus, plastid | 22.68 | 30.34 |
| Solyc02g065430.1.1 | Tomato | cytosol | 23.71 | 30.26 |
| Bra039208.1-P | Field mustard | cytosol | 21.65 | 30.22 |
| CDX89594 | Canola | cytosol | 25.26 | 30.06 |
| VIT_00s0207g00180.t01 | Wine grape | cytosol | 25.26 | 30.06 |
| CDY22462 | Canola | cytosol, nucleus, plastid | 26.8 | 30.06 |
| CDX76853 | Canola | cytosol | 25.26 | 29.88 |
| PGSC0003DMT400007187 | Potato | cytosol | 23.2 | 29.61 |
| Solyc03g044860.1.1 | Tomato | cytosol | 22.16 | 29.45 |
| KRH08345 | Soybean | cytosol | 25.77 | 29.24 |
| CDX69254 | Canola | cytosol | 26.8 | 29.21 |
| CDX75606 | Canola | nucleus | 26.29 | 29.14 |
| Bra011715.1-P | Field mustard | nucleus | 26.29 | 29.14 |
| CDY24764 | Canola | cytosol, nucleus, plastid | 25.77 | 28.9 |
| Bra010578.1-P | Field mustard | cytosol, nucleus, plastid | 21.65 | 28.0 |
| KRH69989 | Soybean | cytosol | 23.71 | 27.88 |
| VIT_03s0063g01940.t01 | Wine grape | cytosol | 23.71 | 26.44 |
| OQU89709 | Sorghum | plastid | 30.41 | 25.88 |
| OQU84553 | Sorghum | plastid | 26.29 | 25.12 |
| EER88673 | Sorghum | plastid | 29.38 | 24.78 |
| EES06442 | Sorghum | plastid | 24.74 | 23.53 |
| EER96983 | Sorghum | cytosol | 26.29 | 21.98 |
Protein Annotations
| EnsemblPlants:EER95817 | EnsemblPlantsGene:SORBI_3002G020200 | EntrezGene:8059889 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF62 | PFAM:PF14009 | ProteinID:EER95817 | ProteinID:EER95817.1 |
| RefSeq:XP_002459296.1 | SEG:seg | UniParc:UPI0001A82E22 | UniProt:C5X8N4 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr2:+:1875854..1877954
Molecular Weight (calculated)
20329.1 Da
IEP (calculated)
8.909
GRAVY (calculated)
-0.227
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQCMSSGAA SESARAAAAA AASKDTALVL MPSGEMREYP RPTTAARVLE DATTSHDDDD DWFLCDADGM GFEGPVPALR DVELLRAGQI YFVLRGTARR
101: HGLRREEVAA LAVRASAALS SRAAASAAPG KRRRGAVVTP LVFAPPPSEE DERAAAACKA KAAAAAPPVR RAAPRVRSGR RLERFASDLT AIAE
101: HGLRREEVAA LAVRASAALS SRAAASAAPG KRRRGAVVTP LVFAPPPSEE DERAAAACKA KAAAAAPPVR RAAPRVRSGR RLERFASDLT AIAE
001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
Arabidopsis Description
Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.