CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY04768
CDY06478
CDY21400
CDY23174
CDY25761

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37240.1	CDY04768	AT1G22920.1	21798944
AT4G37240.1	CDY21400	AT1G22920.1	21798944
AT4G37240.1	CDY25761	AT1G22920.1	21798944
AT4G37240.1	CDX73678	AT3G51920.1	17360592
AT4G37240.1	CDX95314	AT3G51920.1	17360592
AT4G37240.1	CDY23174	AT3G51920.1	17360592
AT4G37240.1	CDY06478	AT4G14640.1	17360592
AT4G37240.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011715.1-P	Field mustard	nucleus	100.0	100.0
CDX69254	Canola	cytosol	98.29	96.63
AT4G37240.1	Thale cress	cytosol, nucleus, plastid	78.86	82.14
CDY22462	Canola	cytosol, nucleus, plastid	81.14	82.08
CDY42708	Canola	nucleus	79.43	81.29
CDY24764	Canola	cytosol, nucleus, plastid	78.86	79.77
CDX72612	Canola	nucleus	77.71	79.53
CDX89594	Canola	cytosol	64.0	68.71
CDY39665	Canola	cytosol	63.43	68.1
CDY46066	Canola	cytosol	61.71	66.26
CDX76853	Canola	cytosol	61.71	65.85
PGSC0003DMT400059007	Potato	cytosol, nucleus, plastid	46.86	56.55
Solyc03g044860.1.1	Tomato	cytosol	46.86	56.16
Solyc02g089990.1.1	Tomato	nucleus	49.14	53.42
PGSC0003DMT400026013	Potato	cytosol, nucleus, plastid	49.14	53.09
KRH76906	Soybean	cytosol	46.86	51.57
CDY45243	Canola	cytosol	41.14	51.43
CDX77946	Canola	cytosol	43.43	51.35
CDX90684	Canola	cytosol, nucleus, plastid	45.71	51.28
CDX73789	Canola	cytosol	44.57	50.98
CDY28982	Canola	nucleus	45.14	50.64
KRH28562	Soybean	cytosol	46.29	49.69
CDY18612	Canola	cytosol	43.43	49.03
CDX81387	Canola	cytosol	42.86	48.39
VIT_03s0063g01940.t01	Wine grape	cytosol	48.0	48.28
CDY28078	Canola	cytosol	44.0	48.12
PGSC0003DMT400007187	Potato	cytosol	41.71	48.03
CDY55087	Canola	cytosol	41.14	47.68
Solyc02g065430.1.1	Tomato	cytosol	41.14	47.37
GSMUA_Achr7P27420_001	Banana	cytosol	42.29	44.85
GSMUA_Achr2P08730_001	Banana	cytosol	41.71	43.98
KRH69989	Soybean	cytosol	38.86	41.21
KRH08345	Soybean	cytosol	39.43	40.35
Os03t0740200-00	Rice	plastid	31.43	32.35
TraesCS5A01G379900.1	Wheat	plastid	30.86	32.34
TraesCS5B01G383500.1	Wheat	plastid	31.43	31.98
TraesCS5D01G389400.1	Wheat	plastid	30.86	31.95
Zm00001d013311_P001	Maize	plastid	28.0	30.62
Zm00001d033943_P001	Maize	plastid	28.0	29.52
KXG37596	Sorghum	cytosol, nucleus, plastid	28.0	29.34
TraesCS5D01G414000.1	Wheat	cytosol	29.71	29.05
HORVU5Hr1G098280.1	Barley	cytosol	29.14	28.98
Os03t0768900-00	Rice	cytosol	29.14	28.98
TraesCS5A01G404200.1	Wheat	cytosol	29.14	28.98
Zm00001d034190_P001	Maize	cytosol	29.71	28.57
TraesCS5A01G404100.1	Wheat	cytosol	28.57	28.41
TraesCS5D01G414200.1	Wheat	cytosol	28.57	28.41
TraesCS5D01G414300.1	Wheat	cytosol	28.57	28.41
CDX96609	Canola	cytosol	33.71	28.1
CDY33663	Canola	cytosol	33.14	28.02
HORVU5Hr1G093900.1	Barley	plastid	28.0	28.0
TraesCS5B01G408800.1	Wheat	cytosol	28.0	27.84
CDY01339	Canola	nucleus	32.57	27.54
TraesCS1D01G444800.1	Wheat	cytosol, plastid	29.14	27.42
HORVU5Hr1G098290.1	Barley	cytosol	27.43	27.27
TraesCS1B01G471500.1	Wheat	mitochondrion	28.57	27.03
TraesCS1D01G444700.1	Wheat	cytosol, extracellular, peroxisome, plastid	28.57	26.88
TraesCS1A01G436300.1	Wheat	mitochondrion	29.14	26.84
TraesCS5D01G414100.1	Wheat	cytosol	27.43	26.82
HORVU1Hr1G094330.1	Barley	cytosol	28.57	26.74
TraesCS5B01G408700.1	Wheat	cytosol	28.0	26.63
EER93387	Sorghum	cytosol	28.57	26.6
TraesCS5B01G409000.1	Wheat	cytosol	25.71	26.32
EER95817	Sorghum	nucleus	29.14	26.29
TraesCS2B01G276100.1	Wheat	cytosol, extracellular, plastid	28.0	26.06
TraesCS2D01G257700.1	Wheat	mitochondrion, nucleus, plastid	28.0	26.06
TraesCS2D01G257800.1	Wheat	plastid	28.57	26.04
TraesCS1A01G436400.1	Wheat	plastid	28.0	25.93
Zm00001d013178_P001	Maize	cytosol	27.43	25.81
TraesCS5A01G404000.1	Wheat	cytosol	26.29	25.7
CDY00357	Canola	nucleus	30.29	25.6
TraesCS2A01G266000.1	Wheat	plastid	28.0	25.52
TraesCS2A01G266100.1	Wheat	cytosol	24.0	25.45
CDY20399	Canola	nucleus, plastid	30.86	25.35
TraesCS2B01G276000.1	Wheat	cytosol, nucleus, plastid	26.86	25.0
CDY45978	Canola	nucleus	30.29	25.0
Os07t0123100-00	Rice	extracellular	29.14	24.88
HORVU2Hr1G061800.1	Barley	plastid	26.86	24.74
Zm00001d018717_P001	Maize	cytosol	26.86	24.23
CDX85960	Canola	cytosol	28.57	24.04
CDY29485	Canola	plastid	33.14	23.97
Zm00001d007974_P001	Maize	nucleus	26.29	23.83
HORVU5Hr1G098260.1	Barley	cytosol, mitochondrion	29.14	23.83
CDX68092	Canola	cytosol, plastid	28.57	23.81
CDY04592	Canola	plastid	32.57	23.65
TraesCS5A01G403900.1	Wheat	plastid	29.14	21.89
CDY06423	Canola	cytosol	17.71	19.25
HORVU2Hr1G061850.1	Barley	extracellular, plastid	19.43	17.17

Protein Annotations

EnsemblPlants:CDX75606	EnsemblPlantsGene:GSBRNA2T00121516001	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF17	PFAM:PF14009
ProteinID:CDX75606	ProteinID:CDX75606.1	SEG:seg	UniParc:UPI00025467F3	MapMan:35.2	:

Description

BnaA01g00960D

Coordinates

chrLK031804:-:1885428..1886116

Molecular Weight (calculated)

18865.5 Da

IEP (calculated)

8.097

GRAVY (calculated)

-0.339

Length

175 amino acids

Sequence
(BLAST)

001: MGICSSTEST QVATAKLILQ DGRMMEFTKP VKVGYVLLKN PMCFICNSDD MEFDEALSAI SADEELQLGQ IYFALPLRYL RQPLQAEEMA ALAAKANSAF
101: MRSGGGGGGG SCRRRRVDPI VAGDKYRVRV ASCDDTVGSG FGRRKGRNAD GGGGGSTSSR RRRECYAAEL STIEE

Best Arabidopsis Sequence Match ( AT4G37240.1 )
(BLAST)

001: MGICSSSEST QVATAKLILQ DGRMMEFANP VKVGYVLLKY PMCFICNSDD MDFDDAVAAI SADEELQLGQ IYFALPLCWL RQPLKAEEMA ALAVKASSAL
101: MRGGGGGCRR KCVEPIVSDK LRMRVGSGDD TVGSGSGRRK VRNGDGGGSV SSSRRRKCYA AELSTIDE

Arabidopsis Description

HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q8LE56]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.