Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G389400.1 | Wheat | plastid | 94.77 | 96.45 |
| TraesCS5A01G379900.1 | Wheat | plastid | 93.02 | 95.81 |
| HORVU5Hr1G093900.1 | Barley | plastid | 85.47 | 84.0 |
| KXG37596 | Sorghum | cytosol, nucleus, plastid | 75.58 | 77.84 |
| Os03t0740200-00 | Rice | plastid | 75.58 | 76.47 |
| Zm00001d033943_P001 | Maize | plastid | 73.26 | 75.9 |
| Zm00001d013311_P001 | Maize | plastid | 66.86 | 71.88 |
| GSMUA_Achr7P27420_001 | Banana | cytosol | 41.28 | 43.03 |
| GSMUA_Achr2P08730_001 | Banana | cytosol | 40.7 | 42.17 |
| TraesCS5B01G408800.1 | Wheat | cytosol | 40.12 | 39.2 |
| Solyc02g089990.1.1 | Tomato | nucleus | 36.63 | 39.13 |
| PGSC0003DMT400026013 | Potato | cytosol, nucleus, plastid | 36.63 | 38.89 |
| TraesCS2B01G276000.1 | Wheat | cytosol, nucleus, plastid | 42.44 | 38.83 |
| PGSC0003DMT400059007 | Potato | cytosol, nucleus, plastid | 32.56 | 38.62 |
| TraesCS2B01G276100.1 | Wheat | cytosol, extracellular, plastid | 41.86 | 38.3 |
| TraesCS5B01G408700.1 | Wheat | cytosol | 40.7 | 38.04 |
| TraesCS5B01G409000.1 | Wheat | cytosol | 37.79 | 38.01 |
| CDY45243 | Canola | cytosol | 30.81 | 37.86 |
| Bra012084.1-P | Field mustard | cytosol | 30.81 | 37.86 |
| Solyc03g044860.1.1 | Tomato | cytosol | 31.98 | 37.67 |
| TraesCS1B01G471500.1 | Wheat | mitochondrion | 39.53 | 36.76 |
| CDX81387 | Canola | cytosol | 32.56 | 36.13 |
| PGSC0003DMT400007187 | Potato | cytosol | 31.4 | 35.53 |
| Solyc02g065430.1.1 | Tomato | cytosol | 31.4 | 35.53 |
| AT5G66580.1 | Thale cress | cytosol | 31.98 | 35.26 |
| VIT_00s0207g00140.t01 | Wine grape | cytosol | 33.14 | 34.97 |
| VIT_00s0207g00180.t01 | Wine grape | cytosol | 33.14 | 34.97 |
| AT3G50800.1 | Thale cress | cytosol, nucleus, plastid | 30.81 | 34.87 |
| Bra037163.1-P | Field mustard | cytosol | 31.4 | 34.84 |
| CDY18612 | Canola | cytosol | 31.4 | 34.84 |
| KRH76906 | Soybean | cytosol | 31.98 | 34.59 |
| CDX77946 | Canola | cytosol | 29.65 | 34.46 |
| Bra036862.1-P | Field mustard | cytosol | 29.07 | 33.78 |
| CDY28982 | Canola | nucleus | 30.23 | 33.33 |
| CDX90684 | Canola | cytosol, nucleus, plastid | 30.23 | 33.33 |
| CDX73789 | Canola | cytosol | 29.65 | 33.33 |
| Bra012887.1-P | Field mustard | cytosol, nucleus, plastid | 30.23 | 33.33 |
| Bra017789.1-P | Field mustard | nucleus | 33.14 | 33.33 |
| Bra031814.1-P | Field mustard | cytosol | 29.07 | 33.11 |
| CDY55087 | Canola | cytosol | 29.07 | 33.11 |
| VIT_03s0063g01940.t01 | Wine grape | cytosol | 33.14 | 32.76 |
| CDY42708 | Canola | nucleus | 32.56 | 32.75 |
| CDX72612 | Canola | nucleus | 32.56 | 32.75 |
| AT4G37240.1 | Thale cress | cytosol, nucleus, plastid | 31.98 | 32.74 |
| KRH28562 | Soybean | cytosol | 30.23 | 31.9 |
| CDX69254 | Canola | cytosol | 32.56 | 31.46 |
| Bra011715.1-P | Field mustard | nucleus | 31.98 | 31.43 |
| CDX75606 | Canola | nucleus | 31.98 | 31.43 |
| CDX89594 | Canola | cytosol | 29.65 | 31.29 |
| CDY28078 | Canola | cytosol | 29.07 | 31.25 |
| CDY22462 | Canola | cytosol, nucleus, plastid | 31.4 | 31.21 |
| TraesCS5B01G270300.1 | Wheat | plastid | 34.88 | 30.93 |
| Bra032151.1-P | Field mustard | cytosol | 29.07 | 30.67 |
| CDY39665 | Canola | cytosol | 29.07 | 30.67 |
| AT2G23690.1 | Thale cress | cytosol | 29.07 | 30.67 |
| KRH08345 | Soybean | cytosol | 30.23 | 30.41 |
| TraesCS5B01G270600.1 | Wheat | plastid | 38.95 | 30.32 |
| CDY24764 | Canola | cytosol, nucleus, plastid | 30.23 | 30.06 |
| KRH69989 | Soybean | cytosol | 28.49 | 29.7 |
| CDY46066 | Canola | cytosol | 27.91 | 29.45 |
| TraesCS7B01G296600.1 | Wheat | plastid | 32.56 | 28.72 |
| TraesCS6B01G196500.1 | Wheat | plastid | 31.4 | 28.42 |
| TraesCS5B01G270500.1 | Wheat | plastid | 35.47 | 28.24 |
| CDX76853 | Canola | cytosol | 26.74 | 28.05 |
| Bra010578.1-P | Field mustard | cytosol, nucleus, plastid | 24.42 | 28.0 |
| TraesCS7B01G296700.1 | Wheat | plastid | 30.81 | 27.6 |
| TraesCS6B01G196600.1 | Wheat | plastid | 30.81 | 27.04 |
| Bra039208.1-P | Field mustard | cytosol | 21.51 | 26.62 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G383500.1 | EnsemblPlantsGene:TraesCS5B01G383500 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF27 | PFAM:PF14009 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:562370932..562371450
Molecular Weight (calculated)
17021.2 Da
IEP (calculated)
7.089
GRAVY (calculated)
0.210
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MGACNSCEAT AVAAVTGASA VGEATAARVV LADGQLQRFP GGTRASQAMK AAAAAATAAP AGACFLCSAD GLELGGAVAA VAADEELQPG QLYFVLPAAM
101: RRRPLQAEEM AALAIRASAA LACDHDGPLV FPDSASGAPA ARSGVKGASR RRSRRAPSLG RDFVPDLGAI AE
101: RRRPLQAEEM AALAIRASAA LACDHDGPLV FPDSASGAPA ARSGVKGASR RRSRRAPSLG RDFVPDLGAI AE
001: MGICSSSEST QVATAKLILQ DGRMMEFANP VKVGYVLLKY PMCFICNSDD MDFDDAVAAI SADEELQLGQ IYFALPLCWL RQPLKAEEMA ALAVKASSAL
101: MRGGGGGCRR KCVEPIVSDK LRMRVGSGDD TVGSGSGRRK VRNGDGGGSV SSSRRRKCYA AELSTIDE
101: MRGGGGGCRR KCVEPIVSDK LRMRVGSGDD TVGSGSGRRK VRNGDGGGSV SSSRRRKCYA AELSTIDE
Arabidopsis Description
HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q8LE56]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.