Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010578.1-P | Field mustard | cytosol, nucleus, plastid | 86.71 | 100.0 |
| CDY22462 | Canola | cytosol, nucleus, plastid | 94.22 | 94.22 |
| AT4G37240.1 | Thale cress | cytosol, nucleus, plastid | 84.39 | 86.9 |
| CDY42708 | Canola | nucleus | 82.08 | 83.04 |
| CDX72612 | Canola | nucleus | 80.92 | 81.87 |
| CDX75606 | Canola | nucleus | 79.77 | 78.86 |
| CDX69254 | Canola | cytosol | 79.77 | 77.53 |
| CDX89594 | Canola | cytosol | 67.05 | 71.17 |
| CDY39665 | Canola | cytosol | 66.47 | 70.55 |
| CDY46066 | Canola | cytosol | 65.32 | 69.33 |
| CDX76853 | Canola | cytosol | 64.74 | 68.29 |
| CDY45243 | Canola | cytosol | 46.24 | 57.14 |
| Solyc03g044860.1.1 | Tomato | cytosol | 47.98 | 56.85 |
| PGSC0003DMT400059007 | Potato | cytosol, nucleus, plastid | 47.4 | 56.55 |
| CDY18612 | Canola | cytosol | 49.71 | 55.48 |
| CDX77946 | Canola | cytosol | 47.4 | 55.41 |
| Solyc02g089990.1.1 | Tomato | nucleus | 51.45 | 55.28 |
| PGSC0003DMT400026013 | Potato | cytosol, nucleus, plastid | 51.45 | 54.94 |
| CDX73789 | Canola | cytosol | 48.55 | 54.9 |
| CDX81387 | Canola | cytosol | 49.13 | 54.84 |
| KRH76906 | Soybean | cytosol | 49.71 | 54.09 |
| CDX90684 | Canola | cytosol, nucleus, plastid | 48.55 | 53.85 |
| CDY55087 | Canola | cytosol | 46.24 | 52.98 |
| CDY28982 | Canola | nucleus | 47.4 | 52.56 |
| Solyc02g065430.1.1 | Tomato | cytosol | 45.66 | 51.97 |
| PGSC0003DMT400007187 | Potato | cytosol | 45.66 | 51.97 |
| KRH28562 | Soybean | cytosol | 48.55 | 51.53 |
| CDY28078 | Canola | cytosol | 46.82 | 50.62 |
| VIT_03s0063g01940.t01 | Wine grape | cytosol | 50.29 | 50.0 |
| GSMUA_Achr7P27420_001 | Banana | cytosol | 45.66 | 47.88 |
| KRH69989 | Soybean | cytosol | 43.93 | 46.06 |
| GSMUA_Achr2P08730_001 | Banana | cytosol | 43.35 | 45.18 |
| KRH08345 | Soybean | cytosol | 42.2 | 42.69 |
| Zm00001d013311_P001 | Maize | plastid | 28.9 | 31.25 |
| Os03t0740200-00 | Rice | plastid | 30.06 | 30.59 |
| TraesCS5A01G379900.1 | Wheat | plastid | 29.48 | 30.54 |
| TraesCS5B01G383500.1 | Wheat | plastid | 30.06 | 30.23 |
| Zm00001d034190_P001 | Maize | cytosol | 31.79 | 30.22 |
| TraesCS5D01G389400.1 | Wheat | plastid | 29.48 | 30.18 |
| TraesCS5A01G404200.1 | Wheat | cytosol | 30.06 | 29.55 |
| Zm00001d033943_P001 | Maize | plastid | 28.32 | 29.52 |
| KXG37596 | Sorghum | cytosol, nucleus, plastid | 28.32 | 29.34 |
| CDY01339 | Canola | nucleus | 34.68 | 28.99 |
| HORVU5Hr1G098280.1 | Barley | cytosol | 29.48 | 28.98 |
| TraesCS5D01G414200.1 | Wheat | cytosol | 29.48 | 28.98 |
| TraesCS5A01G404100.1 | Wheat | cytosol | 29.48 | 28.98 |
| EER93387 | Sorghum | cytosol | 31.21 | 28.72 |
| TraesCS1D01G444800.1 | Wheat | cytosol, plastid | 30.64 | 28.49 |
| Zm00001d013178_P001 | Maize | cytosol | 30.64 | 28.49 |
| TraesCS5D01G414000.1 | Wheat | cytosol | 29.48 | 28.49 |
| Os03t0768900-00 | Rice | cytosol | 28.9 | 28.41 |
| TraesCS5B01G408800.1 | Wheat | cytosol | 28.9 | 28.41 |
| CDX96609 | Canola | cytosol | 34.1 | 28.1 |
| TraesCS1A01G436300.1 | Wheat | mitochondrion | 30.64 | 27.89 |
| TraesCS5D01G414300.1 | Wheat | cytosol | 28.32 | 27.84 |
| HORVU5Hr1G098290.1 | Barley | cytosol | 28.32 | 27.84 |
| TraesCS2B01G276100.1 | Wheat | cytosol, extracellular, plastid | 30.06 | 27.66 |
| TraesCS2D01G257800.1 | Wheat | plastid | 30.64 | 27.6 |
| CDY33663 | Canola | cytosol | 32.95 | 27.54 |
| TraesCS5B01G409000.1 | Wheat | cytosol | 27.17 | 27.49 |
| TraesCS1D01G444700.1 | Wheat | cytosol, extracellular, peroxisome, plastid | 29.48 | 27.42 |
| TraesCS5D01G414100.1 | Wheat | cytosol | 28.32 | 27.37 |
| HORVU1Hr1G094330.1 | Barley | cytosol | 29.48 | 27.27 |
| TraesCS5B01G408700.1 | Wheat | cytosol | 28.9 | 27.17 |
| TraesCS2A01G266000.1 | Wheat | plastid | 30.06 | 27.08 |
| CDY00357 | Canola | nucleus | 32.37 | 27.05 |
| TraesCS1B01G471500.1 | Wheat | mitochondrion | 28.9 | 27.03 |
| CDY20399 | Canola | nucleus, plastid | 32.95 | 26.76 |
| TraesCS2D01G257700.1 | Wheat | mitochondrion, nucleus, plastid | 28.9 | 26.6 |
| TraesCS1A01G436400.1 | Wheat | plastid | 28.9 | 26.45 |
| CDX85960 | Canola | cytosol | 31.79 | 26.44 |
| CDY45978 | Canola | nucleus | 32.37 | 26.42 |
| HORVU5Hr1G093900.1 | Barley | plastid | 26.59 | 26.29 |
| TraesCS5A01G404000.1 | Wheat | cytosol | 27.17 | 26.26 |
| CDX68092 | Canola | cytosol, plastid | 31.79 | 26.19 |
| TraesCS2A01G266100.1 | Wheat | cytosol | 24.86 | 26.06 |
| HORVU2Hr1G061800.1 | Barley | plastid | 28.32 | 25.79 |
| EER95817 | Sorghum | nucleus | 28.9 | 25.77 |
| TraesCS2B01G276000.1 | Wheat | cytosol, nucleus, plastid | 27.75 | 25.53 |
| Os07t0123100-00 | Rice | extracellular | 30.06 | 25.37 |
| CDY29485 | Canola | plastid | 34.1 | 24.38 |
| Zm00001d007974_P001 | Maize | nucleus | 27.17 | 24.35 |
| CDY04592 | Canola | plastid | 33.53 | 24.07 |
| HORVU5Hr1G098260.1 | Barley | cytosol, mitochondrion | 29.48 | 23.83 |
| Zm00001d018717_P001 | Maize | cytosol | 26.59 | 23.71 |
| TraesCS5A01G403900.1 | Wheat | plastid | 30.06 | 22.32 |
| CDY06423 | Canola | cytosol | 20.23 | 21.74 |
| HORVU2Hr1G061850.1 | Barley | extracellular, plastid | 19.08 | 16.67 |
Protein Annotations
| EnsemblPlants:CDY24764 | EnsemblPlantsGene:GSBRNA2T00027204001 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF17 | PFAM:PF14009 |
| ProteinID:CDY24764 | ProteinID:CDY24764.1 | SEG:seg | UniParc:UPI0004EDCF32 | UniProt:A0A078GHH9 | MapMan:35.2 |
Description
BnaA08g15460DBnaA08g15460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GHH9]
Coordinates
chrLK032164:+:1469..1990
Molecular Weight (calculated)
18544.2 Da
IEP (calculated)
7.748
GRAVY (calculated)
-0.269
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MGICSSSEST QVASAKLILQ DGKMMEFANP VKVGYVLQKY PMCFICNSDD MDFDDAVSAI SAEEELQLGQ IYFALPLRWL REPLKAEEMA ALAVKASSAL
101: MRSGGGGGGS CRRKCIDHVV VSDKYRLNVG SGDDTVGSGR VRRKGRNVDG GGGSSSSGRK RKCYAAELST IEE
101: MRSGGGGGGS CRRKCIDHVV VSDKYRLNVG SGDDTVGSGR VRRKGRNVDG GGGSSSSGRK RKCYAAELST IEE
001: MGICSSSEST QVATAKLILQ DGRMMEFANP VKVGYVLLKY PMCFICNSDD MDFDDAVAAI SADEELQLGQ IYFALPLCWL RQPLKAEEMA ALAVKASSAL
101: MRGGGGGCRR KCVEPIVSDK LRMRVGSGDD TVGSGSGRRK VRNGDGGGSV SSSRRRKCYA AELSTIDE
101: MRGGGGGCRR KCVEPIVSDK LRMRVGSGDD TVGSGSGRRK VRNGDGGGSV SSSRRRKCYA AELSTIDE
Arabidopsis Description
HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q8LE56]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.