CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX83579
CDX99733
CDY13606
CDY40986

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76600.1	CDX83579	AT3G26030.1	21798944
AT1G76600.1	CDX99733	AT3G26030.1	21798944
AT1G76600.1	CDY13606	AT3G26030.1	21798944
AT1G76600.1	CDY40986	AT3G26030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45978	Canola	nucleus	96.24	96.7
CDX68092	Canola	cytosol, plastid	82.63	83.81
CDX85960	Canola	cytosol	81.22	83.17
AT1G76600.1	Thale cress	nucleus	77.0	75.93
CDY01339	Canola	nucleus	65.73	67.63
CDY00357	Canola	nucleus	65.73	67.63
CDY33663	Canola	cytosol	63.38	65.22
CDX96609	Canola	cytosol	62.91	63.81
CDY04592	Canola	plastid	71.83	63.49
CDY29485	Canola	plastid	70.89	62.4
CDY06423	Canola	cytosol	46.95	62.11
VIT_18s0122g00300.t01	Wine grape	plastid	46.48	51.83
PGSC0003DMT400025724	Potato	cytosol, plastid	42.25	45.92
Solyc04g082960.1.1	Tomato	cytosol	39.91	45.45
TraesCS6D01G158200.1	Wheat	plastid	18.78	37.38
CDY45243	Canola	cytosol	24.41	37.14
GSMUA_Achr9P12270_001	Banana	cytosol	31.92	36.96
CDX76853	Canola	cytosol	27.7	35.98
CDX89594	Canola	cytosol	27.23	35.58
CDY39665	Canola	cytosol	27.23	35.58
CDY46066	Canola	cytosol	26.76	34.97
CDX77946	Canola	cytosol	23.94	34.46
CDY42708	Canola	nucleus	26.76	33.33
CDY24764	Canola	cytosol, nucleus, plastid	26.76	32.95
CDX81387	Canola	cytosol	23.94	32.9
CDX72612	Canola	nucleus	26.29	32.75
CDX73789	Canola	cytosol	23.47	32.68
CDY55087	Canola	cytosol	23.0	32.45
CDY22462	Canola	cytosol, nucleus, plastid	26.29	32.37
CDY18612	Canola	cytosol	23.47	32.26
CDX90684	Canola	cytosol, nucleus, plastid	23.47	32.05
CDY28982	Canola	nucleus	23.0	31.41
CDX75606	Canola	nucleus	25.35	30.86
TraesCS6D01G158100.1	Wheat	plastid	26.76	30.81
CDY28078	Canola	cytosol	23.0	30.62
HORVU6Hr1G034380.1	Barley	plastid	27.23	30.37
TraesCS6A01G168600.1	Wheat	plastid	28.17	30.3
Os02t0193300-01	Rice	mitochondrion	27.23	30.21
TraesCS6D01G157600.1	Wheat	plastid	26.76	30.0
TraesCS6B01G196500.1	Wheat	plastid	26.76	30.0
TraesCS6D01G158000.1	Wheat	plastid	26.76	29.84
CDX69254	Canola	cytosol	24.88	29.78
TraesCS6B01G196600.1	Wheat	plastid	27.23	29.59
TraesCS6D01G157700.1	Wheat	plastid	27.23	29.59
TraesCS6A01G168500.1	Wheat	mitochondrion	25.35	29.03
Os02t0193200-01	Rice	mitochondrion	27.23	29.0
TraesCS7D01G390200.1	Wheat	mitochondrion, plastid	25.82	28.06
TraesCS7D01G390000.1	Wheat	plastid	25.82	28.06
TraesCS7A01G394600.1	Wheat	plastid	25.35	27.55
HORVU6Hr1G034360.1	Barley	mitochondrion, plastid	22.54	27.43
TraesCS7B01G296700.1	Wheat	plastid	24.41	27.08
TraesCS7B01G296600.1	Wheat	plastid	24.41	26.67
TraesCS7A01G394700.1	Wheat	mitochondrion, plastid	24.88	26.5
EES06442	Sorghum	plastid	25.35	26.47
HORVU7Hr1G093050.1	Barley	mitochondrion, plastid	25.35	25.47
Zm00001d046687_P001	Maize	plastid	24.88	25.36
Zm00001d036787_P001	Maize	plastid	25.82	25.35
HORVU7Hr1G093080.1	Barley	plastid	24.41	24.64
OQU84553	Sorghum	plastid	23.47	24.63
Os02t0193100-01	Rice	cytosol, peroxisome, plastid	23.94	24.4
EER88673	Sorghum	plastid	26.29	24.35
Zm00001d015867_P001	Maize	plastid	24.41	24.3
HORVU6Hr1G034350.1	Barley	cytosol	22.07	22.38
TraesCS7D01G390100.1	Wheat	plastid	24.41	21.76

Protein Annotations

EnsemblPlants:CDY20399	EnsemblPlantsGene:GSBRNA2T00012438001	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF15	PFAM:PF14009
ProteinID:CDY20399	ProteinID:CDY20399.1	SEG:seg	UniParc:UPI0004EEE336	UniProt:A0A078G4U9	MapMan:35.2

Description

BnaC02g24170DBnaC02g24170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4U9]

Coordinates

chrLK032107:-:380025..380725

Molecular Weight (calculated)

23405.9 Da

IEP (calculated)

10.533

GRAVY (calculated)

-0.354

Length

213 amino acids

Sequence
(BLAST)

001: MGLCVSVGRS DCDSSPTAKI VTVNGDLREY NVPVLASQVL EAESSSSSSS SSRTSSYFLC NSDSLYYDDF IPAIESEEFL QADQIYFVLP VSKRQYRLTA
101: SDMAALAVKA SVAIEKAAGK KNRRRKSGRI SPVMILNRPN ERSVAVNRNA NETMMAQKGK VLNKTTPFKT ATTSGYSRSG SVRRLKRYAS VRAKKLAARS
201: IKRLSTIYEG TVF

Best Arabidopsis Sequence Match ( AT1G76600.1 )
(BLAST)

001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN

Arabidopsis Description

Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.