Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20399 | Canola | nucleus, plastid | 75.93 | 77.0 |
| CDY45978 | Canola | nucleus | 75.46 | 76.89 |
| Bra008267.1-P | Field mustard | nucleus | 75.46 | 76.89 |
| CDX68092 | Canola | cytosol, plastid | 72.69 | 74.76 |
| Bra003714.1-P | Field mustard | cytosol | 72.22 | 74.29 |
| CDX85960 | Canola | cytosol | 70.37 | 73.08 |
| AT1G21010.1 | Thale cress | cytosol | 64.81 | 66.67 |
| CDY06423 | Canola | cytosol | 43.52 | 58.39 |
| VIT_18s0122g00300.t01 | Wine grape | plastid | 47.22 | 53.4 |
| Solyc04g082960.1.1 | Tomato | cytosol | 41.67 | 48.13 |
| PGSC0003DMT400025724 | Potato | cytosol, plastid | 42.59 | 46.94 |
| TraesCS6D01G158200.1 | Wheat | plastid | 18.98 | 38.32 |
| GSMUA_Achr9P12270_001 | Banana | cytosol | 31.02 | 36.41 |
| AT2G23690.1 | Thale cress | cytosol | 26.39 | 34.97 |
| AT3G50800.1 | Thale cress | cytosol, nucleus, plastid | 24.54 | 34.87 |
| AT5G66580.1 | Thale cress | cytosol | 25.0 | 34.62 |
| HORVU6Hr1G034380.1 | Barley | plastid | 29.17 | 32.98 |
| AT4G37240.1 | Thale cress | cytosol, nucleus, plastid | 25.46 | 32.74 |
| TraesCS6B01G196500.1 | Wheat | plastid | 28.7 | 32.63 |
| TraesCS6A01G168600.1 | Wheat | plastid | 29.17 | 31.82 |
| TraesCS6D01G157600.1 | Wheat | plastid | 27.78 | 31.58 |
| TraesCS6D01G158000.1 | Wheat | plastid | 27.78 | 31.41 |
| TraesCS6D01G158100.1 | Wheat | plastid | 26.85 | 31.35 |
| Os02t0193300-01 | Rice | mitochondrion | 27.78 | 31.25 |
| TraesCS6B01G196600.1 | Wheat | plastid | 28.24 | 31.12 |
| TraesCS6D01G157700.1 | Wheat | plastid | 28.24 | 31.12 |
| TraesCS6A01G168500.1 | Wheat | mitochondrion | 26.39 | 30.65 |
| Os02t0193200-01 | Rice | mitochondrion | 27.78 | 30.0 |
| TraesCS7D01G390200.1 | Wheat | mitochondrion, plastid | 26.85 | 29.59 |
| TraesCS7D01G390000.1 | Wheat | plastid | 26.39 | 29.08 |
| TraesCS7A01G394600.1 | Wheat | plastid | 26.39 | 29.08 |
| HORVU6Hr1G034360.1 | Barley | mitochondrion, plastid | 23.15 | 28.57 |
| TraesCS7B01G296700.1 | Wheat | plastid | 25.0 | 28.12 |
| TraesCS7A01G394700.1 | Wheat | mitochondrion, plastid | 25.93 | 28.0 |
| TraesCS7B01G296600.1 | Wheat | plastid | 25.0 | 27.69 |
| Zm00001d046687_P001 | Maize | plastid | 26.39 | 27.27 |
| Zm00001d036787_P001 | Maize | plastid | 27.31 | 27.19 |
| HORVU7Hr1G093050.1 | Barley | mitochondrion, plastid | 26.39 | 26.89 |
| EER88673 | Sorghum | plastid | 28.24 | 26.52 |
| HORVU7Hr1G093080.1 | Barley | plastid | 25.46 | 26.07 |
| EES06442 | Sorghum | plastid | 24.54 | 25.98 |
| OQU84553 | Sorghum | plastid | 24.07 | 25.62 |
| Os02t0193100-01 | Rice | cytosol, peroxisome, plastid | 24.07 | 24.88 |
| Zm00001d015867_P001 | Maize | plastid | 24.07 | 24.3 |
| HORVU6Hr1G034350.1 | Barley | cytosol | 23.61 | 24.29 |
| TraesCS7D01G390100.1 | Wheat | plastid | 25.46 | 23.01 |
Protein Annotations
| MapMan:35.2 | EntrezGene:843993 | UniProt:A0A178W9S8 | ProteinID:AAG51956.1 | ProteinID:AEE35863.1 | ArrayExpress:AT1G76600 |
| EnsemblPlantsGene:AT1G76600 | RefSeq:AT1G76600 | TAIR:AT1G76600 | RefSeq:AT1G76600-TAIR-G | EnsemblPlants:AT1G76600.1 | TAIR:AT1G76600.1 |
| EMBL:AY086925 | Unigene:At.19394 | EMBL:BT000025 | InterPro:DUF4228_plant | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | RefSeq:NP_565136.1 | ProteinID:OAP14946.1 | PFAM:PF14009 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF15 |
| UniProt:Q9C9J8 | UniParc:UPI00000AC1FA | SEG:seg | : | : | : |
Description
Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
Coordinates
chr1:+:28746833..28747848
Molecular Weight (calculated)
23798.2 Da
IEP (calculated)
10.383
GRAVY (calculated)
-0.413
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.