Factsheet for Bra003714.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra025179.1-P
Bra036351.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76600.1	Bra025179.1-P	AT3G26030.1	21798944
AT1G76600.1	Bra036351.1-P	AT3G26030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68092	Canola	cytosol, plastid	98.57	98.57
Bra008267.1-P	Field mustard	nucleus	83.33	82.55
AT1G76600.1	Thale cress	nucleus	74.29	72.22
Bra025866.1-P	Field mustard	cytosol	64.76	64.15
Bra012264.1-P	Field mustard	cytosol	60.48	61.35
Bra016439.1-P	Field mustard	cytosol	60.48	60.48
VIT_18s0122g00300.t01	Wine grape	plastid	44.29	48.69
PGSC0003DMT400025724	Potato	cytosol, plastid	40.0	42.86
Solyc04g082960.1.1	Tomato	cytosol	38.1	42.78
TraesCS6D01G158200.1	Wheat	plastid	18.57	36.45
Bra012084.1-P	Field mustard	cytosol	24.29	36.43
Bra039208.1-P	Field mustard	cytosol	22.38	33.81
Bra032151.1-P	Field mustard	cytosol	26.19	33.74
GSMUA_Achr9P12270_001	Banana	cytosol	29.52	33.7
Bra031814.1-P	Field mustard	cytosol	23.81	33.11
Bra036862.1-P	Field mustard	cytosol	22.86	32.43
Bra037163.1-P	Field mustard	cytosol	23.81	32.26
Bra010578.1-P	Field mustard	cytosol, nucleus, plastid	22.86	32.0
Bra017789.1-P	Field mustard	nucleus	25.24	30.99
Bra012887.1-P	Field mustard	cytosol, nucleus, plastid	22.86	30.77
Os02t0193300-01	Rice	mitochondrion	28.1	30.73
HORVU6Hr1G034380.1	Barley	plastid	27.14	29.84
TraesCS6D01G158100.1	Wheat	plastid	26.19	29.73
TraesCS7D01G390000.1	Wheat	plastid	27.62	29.59
TraesCS7D01G390200.1	Wheat	mitochondrion, plastid	27.62	29.59
Os02t0193200-01	Rice	mitochondrion	28.1	29.5
TraesCS6B01G196500.1	Wheat	plastid	26.67	29.47
TraesCS6A01G168600.1	Wheat	plastid	27.62	29.29
TraesCS7B01G296600.1	Wheat	plastid	27.14	29.23
TraesCS6D01G157600.1	Wheat	plastid	26.19	28.95
TraesCS6D01G158000.1	Wheat	plastid	26.19	28.8
TraesCS6B01G196600.1	Wheat	plastid	26.67	28.57
TraesCS6D01G157700.1	Wheat	plastid	26.67	28.57
Bra011715.1-P	Field mustard	nucleus	23.81	28.57
TraesCS6A01G168500.1	Wheat	mitochondrion	25.24	28.49
TraesCS7A01G394600.1	Wheat	plastid	26.19	28.06
TraesCS7A01G394700.1	Wheat	mitochondrion, plastid	26.67	28.0
EES06442	Sorghum	plastid	27.14	27.94
TraesCS7B01G296700.1	Wheat	plastid	25.24	27.6
HORVU6Hr1G034360.1	Barley	mitochondrion, plastid	22.86	27.43
HORVU7Hr1G093050.1	Barley	mitochondrion, plastid	26.67	26.42
Os02t0193100-01	Rice	cytosol, peroxisome, plastid	25.71	25.84
HORVU7Hr1G093080.1	Barley	plastid	25.71	25.59
Zm00001d015867_P001	Maize	plastid	25.71	25.23
OQU84553	Sorghum	plastid	24.29	25.12
Zm00001d046687_P001	Maize	plastid	24.76	24.88
Zm00001d036787_P001	Maize	plastid	24.76	23.96
EER88673	Sorghum	plastid	26.19	23.91
TraesCS7D01G390100.1	Wheat	plastid	26.67	23.43
HORVU6Hr1G034350.1	Barley	cytosol	21.43	21.43

Protein Annotations

EnsemblPlants:Bra003714.1	EnsemblPlants:Bra003714.1-P	EnsemblPlantsGene:Bra003714	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF15
PFAM:PF14009	SEG:seg	UniParc:UPI0002541556	UniProt:M4CHN1	MapMan:35.2	:

Description

AT1G76600 (E=3e-072) | unknown protein

Coordinates

chrA07:-:14649223..14649855

Molecular Weight (calculated)

23352.0 Da

IEP (calculated)

10.138

GRAVY (calculated)

-0.387

Length

210 amino acids

Sequence
(BLAST)

001: MGLCVSVGRS DCDSSPAAKI VTVNGDLREY NVPVLASQVL EAESMASSSS SRPSSYFLCN SDSLYYDDFI PAIEPEEILQ ADQIYFVLPV SKRQYRLTAS
101: DMAALAVKAS VAMEKAAKNN NRRRKSGRIS PVMTLNQPNE RLVAVNRSSM MMMQKGNLPN KTTQFKSTDT ISYYRSGSVR QLKRYASGKA RKLAARSIKR
201: LSTIHEENIF

Best Arabidopsis Sequence Match ( AT1G76600.1 )
(BLAST)

001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN

Arabidopsis Description

Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.