CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046687_P001	Maize	plastid	73.04	80.38
Zm00001d036787_P001	Maize	plastid	68.26	72.35
TraesCS7A01G394600.1	Wheat	plastid	53.04	62.24
TraesCS7B01G296700.1	Wheat	plastid	51.74	61.98
TraesCS7A01G394700.1	Wheat	mitochondrion, plastid	53.04	61.0
TraesCS7D01G390200.1	Wheat	mitochondrion, plastid	51.74	60.71
TraesCS7D01G390000.1	Wheat	plastid	50.43	59.18
TraesCS7B01G296600.1	Wheat	plastid	50.0	58.97
HORVU7Hr1G093050.1	Barley	mitochondrion, plastid	53.48	58.02
HORVU7Hr1G093080.1	Barley	plastid	49.13	53.55
TraesCS7D01G390100.1	Wheat	plastid	51.74	49.79
EES06442	Sorghum	plastid	43.91	49.51
OQU84553	Sorghum	plastid	39.57	44.83
GSMUA_Achr9P12270_001	Banana	cytosol	29.57	36.96
OQU89709	Sorghum	plastid	33.91	34.21
KXG37596	Sorghum	cytosol, nucleus, plastid	24.78	34.13
VIT_18s0122g00300.t01	Wine grape	plastid	26.09	31.41
EER93387	Sorghum	cytosol	25.22	30.85
EER96983	Sorghum	cytosol	30.43	30.17
EER95817	Sorghum	nucleus	24.78	29.38
PGSC0003DMT400025724	Potato	cytosol, plastid	24.35	28.57
Solyc04g082960.1.1	Tomato	cytosol	23.04	28.34
AT1G76600.1	Thale cress	nucleus	26.52	28.24
AT1G21010.1	Thale cress	cytosol	25.65	28.1
CDY33663	Canola	cytosol	25.22	28.02
CDX96609	Canola	cytosol	24.78	27.14
Bra016439.1-P	Field mustard	cytosol	24.78	27.14
CDX85960	Canola	cytosol	24.35	26.92
Bra025866.1-P	Field mustard	cytosol	24.78	26.89
CDY01339	Canola	nucleus	23.91	26.57
CDY00357	Canola	nucleus	23.91	26.57
CDY20399	Canola	nucleus, plastid	24.35	26.29
Bra003714.1-P	Field mustard	cytosol	23.91	26.19
Bra012264.1-P	Field mustard	cytosol	23.48	26.09
CDY45978	Canola	nucleus	23.91	25.94
Bra008267.1-P	Field mustard	nucleus	23.91	25.94
CDX68092	Canola	cytosol, plastid	23.48	25.71
CDY04592	Canola	plastid	25.22	24.07
CDY06423	Canola	cytosol	16.52	23.6
CDY29485	Canola	plastid	24.78	23.55

Protein Annotations

EnsemblPlants:EER88673	EnsemblPlantsGene:SORBI_3010G196600	EntrezGene:8083474	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF11
PFAM:PF14009	ProteinID:EER88673	ProteinID:EER88673.1	RefSeq:XP_002437306.1	SEG:seg	unigene:Sbi.20017
UniParc:UPI0001A894D1	UniProt:C5Z680	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:53984493..53985549

Molecular Weight (calculated)

23320.4 Da

IEP (calculated)

10.928

GRAVY (calculated)

-0.187

Length

230 amino acids

Sequence
(BLAST)

001: MGSGLSSSHR RSSASLHQPP ATSPSPSSSP PAAPPALVIA ADGSLREFTP PAVSVSDALA LALVGAANAD GRRSFFVCSA DALYFDADVP ALGADELLRP
101: GQMYFVLPAP MLGRPLSAAD MAALAVRASQ ALAAAAAATA TAGPRSGGHG RRRPRGRGGF AKTRVVPAQA HHHAHGGDEG VNEKLNQRTL GGFETTASRG
201: PASNARKSAV AARPAPPVRR ALSTIEEDAE

Best Arabidopsis Sequence Match ( AT1G76600.1 )
(BLAST)

001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN

Arabidopsis Description

Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.