Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G76600.1 | CDX83579 | AT3G26030.1 | 21798944 |
| AT1G76600.1 | CDX99733 | AT3G26030.1 | 21798944 |
| AT1G76600.1 | CDY13606 | AT3G26030.1 | 21798944 |
| AT1G76600.1 | CDY40986 | AT3G26030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003714.1-P | Field mustard | cytosol | 98.57 | 98.57 |
| CDX85960 | Canola | cytosol | 93.81 | 94.71 |
| CDY45978 | Canola | nucleus | 83.81 | 83.02 |
| CDY20399 | Canola | nucleus, plastid | 83.81 | 82.63 |
| AT1G76600.1 | Thale cress | nucleus | 74.76 | 72.69 |
| CDY06423 | Canola | cytosol | 53.33 | 69.57 |
| CDY00357 | Canola | nucleus | 60.95 | 61.84 |
| CDY01339 | Canola | nucleus | 60.95 | 61.84 |
| CDY33663 | Canola | cytosol | 59.52 | 60.39 |
| CDX96609 | Canola | cytosol | 60.0 | 60.0 |
| CDY04592 | Canola | plastid | 67.14 | 58.51 |
| CDY29485 | Canola | plastid | 64.76 | 56.2 |
| VIT_18s0122g00300.t01 | Wine grape | plastid | 44.29 | 48.69 |
| PGSC0003DMT400025724 | Potato | cytosol, plastid | 40.95 | 43.88 |
| Solyc04g082960.1.1 | Tomato | cytosol | 39.05 | 43.85 |
| TraesCS6D01G158200.1 | Wheat | plastid | 18.57 | 36.45 |
| CDY45243 | Canola | cytosol | 23.81 | 35.71 |
| CDX76853 | Canola | cytosol | 27.14 | 34.76 |
| CDX89594 | Canola | cytosol | 26.19 | 33.74 |
| CDX81387 | Canola | cytosol | 24.76 | 33.55 |
| GSMUA_Achr9P12270_001 | Banana | cytosol | 29.05 | 33.15 |
| CDY39665 | Canola | cytosol | 25.71 | 33.13 |
| CDY55087 | Canola | cytosol | 23.81 | 33.11 |
| CDX77946 | Canola | cytosol | 23.33 | 33.11 |
| CDY18612 | Canola | cytosol | 24.29 | 32.9 |
| CDY46066 | Canola | cytosol | 25.24 | 32.52 |
| CDY24764 | Canola | cytosol, nucleus, plastid | 26.19 | 31.79 |
| CDY42708 | Canola | nucleus | 25.71 | 31.58 |
| CDX73789 | Canola | cytosol | 22.86 | 31.37 |
| CDX72612 | Canola | nucleus | 25.24 | 30.99 |
| CDY28982 | Canola | nucleus | 22.86 | 30.77 |
| CDX90684 | Canola | cytosol, nucleus, plastid | 22.86 | 30.77 |
| Os02t0193300-01 | Rice | mitochondrion | 28.1 | 30.73 |
| CDY22462 | Canola | cytosol, nucleus, plastid | 25.24 | 30.64 |
| TraesCS6D01G158100.1 | Wheat | plastid | 26.19 | 29.73 |
| TraesCS7D01G390000.1 | Wheat | plastid | 27.62 | 29.59 |
| TraesCS7D01G390200.1 | Wheat | mitochondrion, plastid | 27.62 | 29.59 |
| Os02t0193200-01 | Rice | mitochondrion | 28.1 | 29.5 |
| TraesCS6B01G196500.1 | Wheat | plastid | 26.67 | 29.47 |
| CDY28078 | Canola | cytosol | 22.38 | 29.38 |
| TraesCS6D01G157600.1 | Wheat | plastid | 26.19 | 28.95 |
| HORVU6Hr1G034380.1 | Barley | plastid | 26.19 | 28.8 |
| TraesCS6A01G168600.1 | Wheat | plastid | 27.14 | 28.79 |
| CDX75606 | Canola | nucleus | 23.81 | 28.57 |
| TraesCS6B01G196600.1 | Wheat | plastid | 26.67 | 28.57 |
| TraesCS6D01G158000.1 | Wheat | plastid | 25.71 | 28.27 |
| TraesCS7B01G296600.1 | Wheat | plastid | 26.19 | 28.21 |
| TraesCS7A01G394600.1 | Wheat | plastid | 26.19 | 28.06 |
| TraesCS6D01G157700.1 | Wheat | plastid | 26.19 | 28.06 |
| TraesCS7A01G394700.1 | Wheat | mitochondrion, plastid | 26.67 | 28.0 |
| TraesCS6A01G168500.1 | Wheat | mitochondrion | 24.76 | 27.96 |
| TraesCS7B01G296700.1 | Wheat | plastid | 25.24 | 27.6 |
| CDX69254 | Canola | cytosol | 23.33 | 27.53 |
| EES06442 | Sorghum | plastid | 26.67 | 27.45 |
| HORVU6Hr1G034360.1 | Barley | mitochondrion, plastid | 22.38 | 26.86 |
| HORVU7Hr1G093050.1 | Barley | mitochondrion, plastid | 26.67 | 26.42 |
| HORVU7Hr1G093080.1 | Barley | plastid | 26.19 | 26.07 |
| Os02t0193100-01 | Rice | cytosol, peroxisome, plastid | 25.71 | 25.84 |
| OQU84553 | Sorghum | plastid | 24.29 | 25.12 |
| Zm00001d015867_P001 | Maize | plastid | 25.24 | 24.77 |
| Zm00001d046687_P001 | Maize | plastid | 24.29 | 24.4 |
| Zm00001d036787_P001 | Maize | plastid | 24.76 | 23.96 |
| EER88673 | Sorghum | plastid | 25.71 | 23.48 |
| TraesCS7D01G390100.1 | Wheat | plastid | 26.19 | 23.01 |
| HORVU6Hr1G034350.1 | Barley | cytosol | 21.43 | 21.43 |
Protein Annotations
| EnsemblPlants:CDX68092 | EnsemblPlantsGene:GSBRNA2T00099331001 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF15 | PFAM:PF14009 |
| ProteinID:CDX68092 | ProteinID:CDX68092.1 | SEG:seg | UniParc:UPI0004EDCF58 | MapMan:35.2 | : |
Description
BnaA07g21320D
Coordinates
chrLK031787:-:3815132..3815764
Molecular Weight (calculated)
23266.9 Da
IEP (calculated)
10.121
GRAVY (calculated)
-0.369
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLCVSVGRS DCDSSPAAKI VTVNGDLREY NVPVLASQVL EAESMASSSS SRPSSYFLCN SDSLYYDDFI PAIEPEEILQ ADQIYFVLPV SKRQYRLTAS
101: DMAALAVKAS VAMEKAAKNK NRSRKSGRIS PVMTLNQPNE RLVAVNRSSM MMMQKGNLPN KTTQFKSTDT IGYYRSGSVR QLKRYASGKA RKLAARSIKR
201: LSTIHEENIF
101: DMAALAVKAS VAMEKAAKNK NRSRKSGRIS PVMTLNQPNE RLVAVNRSSM MMMQKGNLPN KTTQFKSTDT IGYYRSGSVR QLKRYASGKA RKLAARSIKR
201: LSTIHEENIF
001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
Arabidopsis Description
Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.