Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G196500.1 | Wheat | plastid | 89.01 | 89.47 |
| TraesCS6D01G157600.1 | Wheat | plastid | 88.48 | 88.95 |
| TraesCS6A01G168500.1 | Wheat | mitochondrion | 86.39 | 88.71 |
| TraesCS6D01G158000.1 | Wheat | plastid | 88.48 | 88.48 |
| TraesCS6D01G158100.1 | Wheat | plastid | 84.29 | 87.03 |
| HORVU6Hr1G034360.1 | Barley | mitochondrion, plastid | 75.92 | 82.86 |
| Os02t0193300-01 | Rice | mitochondrion | 63.35 | 63.02 |
| Os02t0193200-01 | Rice | mitochondrion | 65.44 | 62.5 |
| HORVU6Hr1G034350.1 | Barley | cytosol | 62.3 | 56.67 |
| Zm00001d015867_P001 | Maize | plastid | 63.35 | 56.54 |
| OQU84553 | Sorghum | plastid | 54.45 | 51.23 |
| HORVU7Hr1G093050.1 | Barley | mitochondrion, plastid | 52.36 | 47.17 |
| HORVU7Hr1G093080.1 | Barley | plastid | 49.21 | 44.55 |
| GSMUA_Achr9P12270_001 | Banana | cytosol | 35.6 | 36.96 |
| HORVU5Hr1G074010.1 | Barley | plastid | 33.51 | 34.78 |
| HORVU5Hr1G098290.1 | Barley | cytosol | 29.84 | 32.39 |
| HORVU5Hr1G098280.1 | Barley | cytosol | 29.84 | 32.39 |
| HORVU1Hr1G094330.1 | Barley | cytosol | 30.89 | 31.55 |
| VIT_18s0122g00300.t01 | Wine grape | plastid | 31.41 | 31.41 |
| HORVU2Hr1G061800.1 | Barley | plastid | 30.89 | 31.05 |
| Solyc04g082960.1.1 | Tomato | cytosol | 29.32 | 29.95 |
| AT1G76600.1 | Thale cress | nucleus | 32.98 | 29.17 |
| CDY33663 | Canola | cytosol | 30.89 | 28.5 |
| AT1G21010.1 | Thale cress | cytosol | 30.89 | 28.1 |
| Bra016439.1-P | Field mustard | cytosol | 30.89 | 28.1 |
| CDX96609 | Canola | cytosol | 30.89 | 28.1 |
| PGSC0003DMT400025724 | Potato | cytosol, plastid | 28.8 | 28.06 |
| HORVU5Hr1G093900.1 | Barley | plastid | 25.13 | 27.43 |
| CDY45978 | Canola | nucleus | 30.37 | 27.36 |
| Bra008267.1-P | Field mustard | nucleus | 30.37 | 27.36 |
| CDY20399 | Canola | nucleus, plastid | 30.37 | 27.23 |
| Bra003714.1-P | Field mustard | cytosol | 29.84 | 27.14 |
| HORVU5Hr1G074030.1 | Barley | cytosol, mitochondrion | 32.46 | 26.5 |
| Bra025866.1-P | Field mustard | cytosol | 29.32 | 26.42 |
| CDX68092 | Canola | cytosol, plastid | 28.8 | 26.19 |
| HORVU5Hr1G074020.1 | Barley | nucleus | 32.98 | 26.14 |
| CDX85960 | Canola | cytosol | 28.27 | 25.96 |
| CDY01339 | Canola | nucleus | 27.75 | 25.6 |
| HORVU5Hr1G098260.1 | Barley | cytosol, mitochondrion | 28.27 | 25.23 |
| CDY00357 | Canola | nucleus | 26.7 | 24.64 |
| Bra012264.1-P | Field mustard | cytosol | 26.18 | 24.15 |
| CDY06423 | Canola | cytosol | 19.9 | 23.6 |
| CDY04592 | Canola | plastid | 29.32 | 23.24 |
| CDY29485 | Canola | plastid | 29.32 | 23.14 |
| HORVU2Hr1G061850.1 | Barley | extracellular, plastid | 18.85 | 18.18 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G034380.1 | EnsemblPlantsGene:HORVU6Hr1G034380 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF25 | PFAM:PF14009 |
| SEG:seg | UniParc:UPI000B481766 | UniProt:A0A287TWE1 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr6H:+:160509375..160511083
Molecular Weight (calculated)
20429.3 Da
IEP (calculated)
9.243
GRAVY (calculated)
-0.271
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAKVSCSST HRGTLSQQQH QPAPVRVIAA DGSLKELPAS PRVAVSDVLA GEAASFFVCN SDALYFNEPP QALASDELLR PGQMYFLLPA SVLGRPLSSA
101: DMAALAVRAS AAIAAKRPER RRGGNKNLRV MPVREEVEDS EDDLFNEKLN ERTLGEFAVS SSPAKKSSGK LAAPSRLRLK RALSIIQEAS D
101: DMAALAVRAS AAIAAKRPER RRGGNKNLRV MPVREEVEDS EDDLFNEKLN ERTLGEFAVS SSPAKKSSGK LAAPSRLRLK RALSIIQEAS D
001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
Arabidopsis Description
Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.