Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G270500.1 | Wheat | plastid | 78.01 | 87.04 |
| TraesCS5D01G278100.1 | Wheat | plastid | 78.01 | 86.64 |
| TraesCS5A01G270000.1 | Wheat | plastid | 75.52 | 83.87 |
| HORVU5Hr1G074010.1 | Barley | plastid | 49.38 | 64.67 |
| HORVU5Hr1G074030.1 | Barley | cytosol, mitochondrion | 59.75 | 61.54 |
| OQU89709 | Sorghum | plastid | 44.4 | 46.93 |
| Zm00001d020967_P001 | Maize | plastid | 42.74 | 44.02 |
| Os09t0492900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 28.63 | 37.7 |
| HORVU5Hr1G098280.1 | Barley | cytosol | 24.48 | 33.52 |
| HORVU6Hr1G034380.1 | Barley | plastid | 26.14 | 32.98 |
| HORVU5Hr1G093900.1 | Barley | plastid | 23.65 | 32.57 |
| HORVU5Hr1G098290.1 | Barley | cytosol | 23.65 | 32.39 |
| HORVU7Hr1G093080.1 | Barley | plastid | 26.97 | 30.81 |
| HORVU6Hr1G034360.1 | Barley | mitochondrion, plastid | 21.99 | 30.29 |
| HORVU7Hr1G093050.1 | Barley | mitochondrion, plastid | 26.56 | 30.19 |
| HORVU1Hr1G094330.1 | Barley | cytosol | 23.24 | 29.95 |
| PGSC0003DMT400064780 | Potato | extracellular | 18.67 | 29.03 |
| Solyc01g109250.2.1 | Tomato | extracellular | 17.84 | 28.67 |
| HORVU2Hr1G061800.1 | Barley | plastid | 22.41 | 28.42 |
| HORVU5Hr1G098260.1 | Barley | cytosol, mitochondrion | 24.48 | 27.57 |
| KRH24527 | Soybean | cytosol | 14.94 | 25.17 |
| KRH29531 | Soybean | cytosol | 14.94 | 25.0 |
| KRH76905 | Soybean | plastid | 14.52 | 23.97 |
| KRH28563 | Soybean | plastid | 14.52 | 23.81 |
| HORVU6Hr1G034350.1 | Barley | cytosol | 20.33 | 23.33 |
| VIT_03s0063g01950.t01 | Wine grape | plastid | 17.43 | 21.32 |
| HORVU2Hr1G061850.1 | Barley | extracellular, plastid | 14.94 | 18.18 |
| Os09t0493000-01 | Rice | plastid | 9.13 | 10.95 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G074020.1 | EnsemblPlantsGene:HORVU5Hr1G074020 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF15 | PFAM:PF14009 |
| SEG:seg | UniParc:UPI000B4886DD | UniProt:A0A287RT08 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr5H:+:541854772..541855991
Molecular Weight (calculated)
25265.7 Da
IEP (calculated)
10.495
GRAVY (calculated)
-0.397
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: IRSTNPLCTC SHDRYDEHVI AREEMGSCVS RSPASTSAPG SGRAVATKTA KVVDVDGSMA QFTAPITAGE VLGSVQERRP GASVFLCSSD ELRFDVPARA
101: LAAEEALQPG WLYFVLPVST LRRSLSGPEM AALAARASSA LAVASGVASP PRRKNGARVP GGNSKRRKAA ARVAPLVVAD EIDGRDGGSD RHHAYGKHGG
201: DEPAGKARKG TGWSGSRSST RRRRRASVTP TLSSILEADD F
101: LAAEEALQPG WLYFVLPVST LRRSLSGPEM AALAARASSA LAVASGVASP PRRKNGARVP GGNSKRRKAA ARVAPLVVAD EIDGRDGGSD RHHAYGKHGG
201: DEPAGKARKG TGWSGSRSST RRRRRASVTP TLSSILEADD F
001: MGICSSYEST QVATAKLILH DGRMMEFTSP VKVGYVLQKN PMCFICNSDD MDFDNVVSAI SADEEFQLGQ LYFALPLSSL HHSLKAEEMA ALAVKASSAL
101: MRSGGSCGRD KCRCRRKCVS PVIFSARRVA AVGANGETRN GKRRGGGGSG RRKYAAKLSK IEE
101: MRSGGSCGRD KCRCRRKCVS PVIFSARRVA AVGANGETRN GKRRGGGGSG RRKYAAKLSK IEE
Arabidopsis Description
HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q680G2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.