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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • nucleus 1
  • mitochondrion 2
  • cytosol 1
  • plasma membrane 1
  • extracellular 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400064780 Potato extracellular 91.33 88.39
VIT_03s0063g01950.t01 Wine grape plastid 46.67 35.53
KRH24527 Soybean cytosol 32.67 34.27
KRH29531 Soybean cytosol 30.67 31.94
KRH76905 Soybean plastid 30.67 31.51
KRH28563 Soybean plastid 30.67 31.29
Solyc02g065430.1.1 Tomato cytosol 30.67 30.26
Solyc03g044860.1.1 Tomato cytosol 28.67 29.45
Solyc02g089990.1.1 Tomato nucleus 31.33 29.19
HORVU5Hr1G074010.1 Barley plastid 29.33 23.91
TraesCS5D01G278000.1 Wheat plastid 29.33 22.8
TraesCS5A01G269900.1 Wheat plastid 29.33 22.8
TraesCS5B01G270300.1 Wheat plastid 29.33 22.68
Solyc04g082960.1.1 Tomato cytosol 28.0 22.46
Os09t0492900-00 Rice cytosol, mitochondrion, nucleus, plastid 25.33 20.77
TraesCS5A01G270100.1 Wheat plastid 29.33 19.91
TraesCS5B01G270600.1 Wheat plastid 29.33 19.91
TraesCS5D01G278200.1 Wheat plastid 28.67 19.46
OQU89709 Sorghum plastid 29.33 19.3
HORVU5Hr1G074030.1 Barley cytosol, mitochondrion 30.0 19.23
TraesCS5A01G270000.1 Wheat plastid 26.67 18.43
TraesCS5D01G278100.1 Wheat plastid 26.67 18.43
Zm00001d020967_P001 Maize plastid 28.67 18.38
EER96983 Sorghum cytosol 28.0 18.1
HORVU5Hr1G074020.1 Barley nucleus 28.67 17.84
TraesCS5B01G270500.1 Wheat plastid 25.33 17.59
Zm00001d020968_P001 Maize plastid 26.0 17.18
Os09t0493000-01 Rice plastid 1.33 1.0
Protein Annotations
EnsemblPlants:Solyc01g109250.2.1EnsemblPlantsGene:Solyc01g109250.2InterPro:DUF4228_plantPANTHER:PTHR33052PANTHER:PTHR33052:SF21PFAM:PF14009
UniParc:UPI0002768804UniProt:K4B3D8MapMan:35.2:::
Description
No Description!
Coordinates
chr1:+:96248944..96249819
Molecular Weight (calculated)
16767.8 Da
IEP (calculated)
8.207
GRAVY (calculated)
0.067
Length
150 amino acids
Sequence
(BLAST)
001: MGICTSSPLM TKQNGSIMNL PVTKVAMVIQ MNGKLQEFRQ PITAGDILIQ NPDFFLCSSE AMNVDSLVPQ LAKDEILQLG QLYFLLPVSK LQTPLSLQDM
101: CLLAVKASTA LNDYCNLSNI VTRKFKKMHD CHIKNLNLRP QVYESPLPLQ
Best Arabidopsis Sequence Match ( AT4G37240.1 )
(BLAST)
001: MGICSSSEST QVATAKLILQ DGRMMEFANP VKVGYVLLKY PMCFICNSDD MDFDDAVAAI SADEELQLGQ IYFALPLCWL RQPLKAEEMA ALAVKASSAL
101: MRGGGGGCRR KCVEPIVSDK LRMRVGSGDD TVGSGSGRRK VRNGDGGGSV SSSRRRKCYA AELSTIDE
Arabidopsis Description
HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q8LE56]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.