Factsheet for Solyc02g065430.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc03g005240.1.1
Solyc06g053930.2.1
Solyc06g073150.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g017300.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37240.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT4G37240.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT4G37240.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT4G37240.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT4G37240.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT4G37240.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT4G37240.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT4G37240.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT4G37240.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT4G37240.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT4G37240.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT4G37240.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT4G37240.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT4G37240.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT4G37240.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT4G37240.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT4G37240.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT4G37240.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT4G37240.1	Solyc12g099990.1.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007187	Potato	cytosol	93.42	93.42
Solyc03g044860.1.1	Tomato	cytosol	58.55	60.96
Solyc02g089990.1.1	Tomato	nucleus	63.82	60.25
VIT_00s0207g00140.t01	Wine grape	cytosol	56.58	52.76
VIT_00s0207g00180.t01	Wine grape	cytosol	56.58	52.76
AT2G23690.1	Thale cress	cytosol	55.92	52.15
KRH76906	Soybean	cytosol	53.95	51.57
CDX89594	Canola	cytosol	53.95	50.31
CDY46066	Canola	cytosol	53.95	50.31
Bra032151.1-P	Field mustard	cytosol	53.29	49.69
CDY39665	Canola	cytosol	53.29	49.69
CDX76853	Canola	cytosol	53.29	49.39
KRH28562	Soybean	cytosol	50.66	47.24
CDY24764	Canola	cytosol, nucleus, plastid	51.97	45.66
AT4G37240.1	Thale cress	cytosol, nucleus, plastid	49.34	44.64
Bra039208.1-P	Field mustard	cytosol	40.79	44.6
CDY22462	Canola	cytosol, nucleus, plastid	50.66	44.51
Bra017789.1-P	Field mustard	nucleus	50.0	44.44
CDX72612	Canola	nucleus	49.34	43.86
CDY42708	Canola	nucleus	49.34	43.86
GSMUA_Achr2P08730_001	Banana	cytosol	46.71	42.77
KRH08345	Soybean	cytosol	47.37	42.11
GSMUA_Achr7P27420_001	Banana	cytosol	44.74	41.21
KRH69989	Soybean	cytosol	44.74	41.21
CDX75606	Canola	nucleus	47.37	41.14
Bra011715.1-P	Field mustard	nucleus	47.37	41.14
CDX69254	Canola	cytosol	48.03	41.01
Bra010578.1-P	Field mustard	cytosol, nucleus, plastid	40.13	40.67
Zm00001d013311_P001	Maize	plastid	33.55	31.88
Os03t0740200-00	Rice	plastid	35.53	31.76
TraesCS5A01G379900.1	Wheat	plastid	34.87	31.74
TraesCS5B01G383500.1	Wheat	plastid	35.53	31.4
TraesCS5D01G389400.1	Wheat	plastid	34.87	31.36
KXG37596	Sorghum	cytosol, nucleus, plastid	34.21	31.14
Zm00001d033943_P001	Maize	plastid	33.55	30.72
Solyc01g109250.2.1	Tomato	extracellular	30.26	30.67
TraesCS5D01G414200.1	Wheat	cytosol	34.87	30.11
TraesCS5A01G404200.1	Wheat	cytosol	34.87	30.11
TraesCS5D01G414000.1	Wheat	cytosol	34.87	29.61
HORVU5Hr1G098280.1	Barley	cytosol	34.21	29.55
TraesCS5A01G404100.1	Wheat	cytosol	34.21	29.55
TraesCS5D01G414300.1	Wheat	cytosol	33.55	28.98
HORVU5Hr1G098290.1	Barley	cytosol	33.55	28.98
TraesCS5B01G408800.1	Wheat	cytosol	33.55	28.98
Zm00001d034190_P001	Maize	cytosol	34.21	28.57
TraesCS5D01G414100.1	Wheat	cytosol	33.55	28.49
TraesCS5B01G409000.1	Wheat	cytosol	31.58	28.07
TraesCS5A01G404000.1	Wheat	cytosol	32.89	27.93
Os03t0768900-00	Rice	cytosol	32.24	27.84
TraesCS5B01G408700.1	Wheat	cytosol	33.55	27.72
HORVU5Hr1G093900.1	Barley	plastid	31.58	27.43
EER93387	Sorghum	cytosol	33.55	27.13
Zm00001d013178_P001	Maize	cytosol	32.89	26.88
TraesCS2B01G276100.1	Wheat	cytosol, extracellular, plastid	32.89	26.6
TraesCS1D01G444700.1	Wheat	cytosol, extracellular, peroxisome, plastid	32.24	26.34
TraesCS1D01G444800.1	Wheat	cytosol, plastid	32.24	26.34
HORVU1Hr1G094330.1	Barley	cytosol	32.24	26.2
TraesCS2D01G257700.1	Wheat	mitochondrion, nucleus, plastid	32.24	26.06
TraesCS2B01G276000.1	Wheat	cytosol, nucleus, plastid	32.24	26.06
TraesCS2A01G266100.1	Wheat	cytosol	28.29	26.06
TraesCS1B01G471500.1	Wheat	mitochondrion	31.58	25.95
TraesCS1A01G436400.1	Wheat	plastid	32.24	25.93
HORVU2Hr1G061800.1	Barley	plastid	32.24	25.79
TraesCS1A01G436300.1	Wheat	mitochondrion	32.24	25.79
Solyc04g082960.1.1	Tomato	cytosol	31.58	25.67
TraesCS2A01G266000.1	Wheat	plastid	32.24	25.52
TraesCS2D01G257800.1	Wheat	plastid	31.58	25.0
Os07t0123100-00	Rice	extracellular	32.89	24.39
HORVU5Hr1G098260.1	Barley	cytosol, mitochondrion	33.55	23.83
EER95817	Sorghum	nucleus	30.26	23.71
TraesCS5A01G403900.1	Wheat	plastid	34.87	22.75
Zm00001d018717_P001	Maize	cytosol	28.29	22.16
Zm00001d007974_P001	Maize	nucleus	26.32	20.73
HORVU2Hr1G061850.1	Barley	extracellular, plastid	20.39	15.66

Protein Annotations

EnsemblPlants:Solyc02g065430.1.1	EnsemblPlantsGene:Solyc02g065430.1	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF17	PFAM:PF14009
SEG:seg	UniParc:UPI0002768BEC	UniProt:K4B6X6	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr2:+:36589795..36590253

Molecular Weight (calculated)

16896.3 Da

IEP (calculated)

8.049

GRAVY (calculated)

-0.273

Length

152 amino acids

Sequence
(BLAST)

001: MGIICSSYES TSVATAKLIL HDGTLQEFSY PIKASFLLQN DPTIFICNSD EMDFGNVVCA VKAEEELQLG QLYFALPLTQ LKHKLKAEEM AALAVKASSA
101: LNTSSSSGEK FIVFEKSGPN FWKKMMDDNN DRTRKGNGRR KKFTVKLSSI NE

Best Arabidopsis Sequence Match ( AT2G23690.1 )
(BLAST)

001: MGICSSYEST QVATAKLILH DGRMMEFTSP VKVGYVLQKN PMCFICNSDD MDFDNVVSAI SADEEFQLGQ LYFALPLSSL HHSLKAEEMA ALAVKASSAL
101: MRSGGSCGRD KCRCRRKCVS PVIFSARRVA AVGANGETRN GKRRGGGGSG RRKYAAKLSK IEE

Arabidopsis Description

HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q680G2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.