Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G266100.1 | Wheat | cytosol | 85.11 | 96.97 |
| TraesCS2B01G276000.1 | Wheat | cytosol, nucleus, plastid | 96.28 | 96.28 |
| HORVU2Hr1G061800.1 | Barley | plastid | 93.62 | 92.63 |
| TraesCS2D01G257800.1 | Wheat | plastid | 87.77 | 85.94 |
| TraesCS1D01G444700.1 | Wheat | cytosol, extracellular, peroxisome, plastid | 84.04 | 84.95 |
| TraesCS1D01G444800.1 | Wheat | cytosol, plastid | 79.79 | 80.65 |
| TraesCS5D01G414300.1 | Wheat | cytosol | 56.38 | 60.23 |
| TraesCS5D01G414200.1 | Wheat | cytosol | 55.85 | 59.66 |
| TraesCS5D01G414000.1 | Wheat | cytosol | 55.32 | 58.1 |
| TraesCS5D01G414100.1 | Wheat | cytosol | 54.79 | 57.54 |
| Zm00001d018717_P001 | Maize | cytosol | 58.51 | 56.7 |
| Os07t0123100-00 | Rice | extracellular | 61.7 | 56.59 |
| EER95817 | Sorghum | nucleus | 57.98 | 56.19 |
| Zm00001d007974_P001 | Maize | nucleus | 52.13 | 50.78 |
| TraesCS5D01G389400.1 | Wheat | plastid | 38.83 | 43.2 |
| CDX77946 | Canola | cytosol | 28.72 | 36.49 |
| Solyc02g089990.1.1 | Tomato | nucleus | 30.85 | 36.02 |
| Bra036862.1-P | Field mustard | cytosol | 28.19 | 35.81 |
| PGSC0003DMT400026013 | Potato | cytosol, nucleus, plastid | 30.85 | 35.8 |
| GSMUA_Achr7P27420_001 | Banana | cytosol | 31.38 | 35.76 |
| GSMUA_Achr2P08730_001 | Banana | cytosol | 31.38 | 35.54 |
| CDX73789 | Canola | cytosol | 28.72 | 35.29 |
| CDY28982 | Canola | nucleus | 29.26 | 35.26 |
| CDY45243 | Canola | cytosol | 26.06 | 35.0 |
| VIT_00s0207g00140.t01 | Wine grape | cytosol | 30.32 | 34.97 |
| CDX90684 | Canola | cytosol, nucleus, plastid | 28.72 | 34.62 |
| AT5G66580.1 | Thale cress | cytosol | 28.72 | 34.62 |
| Bra012887.1-P | Field mustard | cytosol, nucleus, plastid | 28.72 | 34.62 |
| TraesCS6D01G158200.1 | Wheat | plastid | 19.68 | 34.58 |
| VIT_00s0207g00180.t01 | Wine grape | cytosol | 29.79 | 34.36 |
| Bra012084.1-P | Field mustard | cytosol | 25.53 | 34.29 |
| CDX81387 | Canola | cytosol | 28.19 | 34.19 |
| CDY28078 | Canola | cytosol | 28.72 | 33.75 |
| AT3G50800.1 | Thale cress | cytosol, nucleus, plastid | 27.13 | 33.55 |
| CDY55087 | Canola | cytosol | 26.6 | 33.11 |
| Bra031814.1-P | Field mustard | cytosol | 26.6 | 33.11 |
| PGSC0003DMT400059007 | Potato | cytosol, nucleus, plastid | 25.53 | 33.1 |
| Bra037163.1-P | Field mustard | cytosol | 27.13 | 32.9 |
| CDY18612 | Canola | cytosol | 27.13 | 32.9 |
| Solyc03g044860.1.1 | Tomato | cytosol | 25.53 | 32.88 |
| PGSC0003DMT400007187 | Potato | cytosol | 26.06 | 32.24 |
| Solyc02g065430.1.1 | Tomato | cytosol | 26.06 | 32.24 |
| TraesCS7D01G390000.1 | Wheat | plastid | 33.51 | 32.14 |
| KRH76906 | Soybean | cytosol | 26.6 | 31.45 |
| CDY46066 | Canola | cytosol | 27.13 | 31.29 |
| KRH28562 | Soybean | cytosol | 27.13 | 31.29 |
| CDY39665 | Canola | cytosol | 27.13 | 31.29 |
| Bra032151.1-P | Field mustard | cytosol | 27.13 | 31.29 |
| CDX72612 | Canola | nucleus | 28.19 | 30.99 |
| Bra017789.1-P | Field mustard | nucleus | 28.19 | 30.99 |
| AT4G37240.1 | Thale cress | cytosol, nucleus, plastid | 27.66 | 30.95 |
| Bra039208.1-P | Field mustard | cytosol | 22.87 | 30.94 |
| AT2G23690.1 | Thale cress | cytosol | 26.6 | 30.67 |
| CDX89594 | Canola | cytosol | 26.6 | 30.67 |
| TraesCS7D01G390200.1 | Wheat | mitochondrion, plastid | 31.91 | 30.61 |
| CDY42708 | Canola | nucleus | 27.66 | 30.41 |
| CDX76853 | Canola | cytosol | 26.06 | 29.88 |
| KRH69989 | Soybean | cytosol | 26.06 | 29.7 |
| TraesCS6D01G158000.1 | Wheat | plastid | 29.79 | 29.32 |
| KRH08345 | Soybean | cytosol | 26.6 | 29.24 |
| TraesCS6D01G157700.1 | Wheat | plastid | 30.32 | 29.08 |
| TraesCS6D01G157600.1 | Wheat | plastid | 29.26 | 28.95 |
| CDY22462 | Canola | cytosol, nucleus, plastid | 26.6 | 28.9 |
| CDY24764 | Canola | cytosol, nucleus, plastid | 26.6 | 28.9 |
| VIT_03s0063g01940.t01 | Wine grape | cytosol | 26.6 | 28.74 |
| TraesCS6D01G158100.1 | Wheat | plastid | 28.19 | 28.65 |
| CDX69254 | Canola | cytosol | 26.6 | 28.09 |
| CDX75606 | Canola | nucleus | 26.06 | 28.0 |
| Bra011715.1-P | Field mustard | nucleus | 26.06 | 28.0 |
| Bra010578.1-P | Field mustard | cytosol, nucleus, plastid | 22.34 | 28.0 |
| TraesCS5D01G278000.1 | Wheat | plastid | 27.66 | 26.94 |
| TraesCS5D01G278100.1 | Wheat | plastid | 30.32 | 26.27 |
| TraesCS7D01G390100.1 | Wheat | plastid | 32.98 | 25.94 |
| TraesCS5D01G278200.1 | Wheat | plastid | 28.72 | 24.43 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G257700.1 | EnsemblPlantsGene:TraesCS2D01G257700 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF62 | PFAM:PF14009 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:313714145..313714888
Molecular Weight (calculated)
19277.0 Da
IEP (calculated)
8.483
GRAVY (calculated)
-0.055
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLCMSSGGA AAAVRADGQP ASTAMVLLPT GELREYPRPA TAAEALDDNS VAGDAGWFLC DADAMGFEGP VAAVAGAEEL RPGQIYFVLP AEARKNGLRR
101: EDLAALAVRA SAALVSKANA NASGSGGRRR RAGSVSPLVF APPPEVDGTL AYKTVPALAA KRRPVARAKS AGRMQRFAPD LTAIPECE
101: EDLAALAVRA SAALVSKANA NASGSGGRRR RAGSVSPLVF APPPEVDGTL AYKTVPALAA KRRPVARAKS AGRMQRFAPD LTAIPECE
001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
Arabidopsis Description
Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.