Factsheet for Bra010578.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra012351.1-P
Bra018296.1-P
Bra024548.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37240.1	Bra012351.1-P	AT1G22920.1	21798944
AT4G37240.1	Bra024548.1-P	AT1G22920.1	21798944
AT4G37240.1	Bra000214.1-P	AT2G41090.1	17360592
AT4G37240.1	Bra000214.1-P	AT2G41100.1	17360592
AT4G37240.1	Bra018296.1-P	AT3G51920.1	17360592
AT4G37240.1	Bra033467.1-P	AT3G51920.1	17360592
AT4G37240.1	Bra039723.1-P	AT4G14640.1	17360592
AT4G37240.1	Bra002368.1-P	AT5G21274.1	17360592
AT4G37240.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24764	Canola	cytosol, nucleus, plastid	100.0	86.71
AT4G37240.1	Thale cress	cytosol, nucleus, plastid	83.33	74.4
Bra017789.1-P	Field mustard	nucleus	81.33	71.34
Bra011715.1-P	Field mustard	nucleus	78.67	67.43
Bra039208.1-P	Field mustard	cytosol	61.33	66.19
Bra032151.1-P	Field mustard	cytosol	64.0	58.9
Bra012084.1-P	Field mustard	cytosol	44.67	47.86
Bra037163.1-P	Field mustard	cytosol	48.0	46.45
PGSC0003DMT400059007	Potato	cytosol, nucleus, plastid	44.0	45.52
Bra036862.1-P	Field mustard	cytosol	44.67	45.27
Solyc03g044860.1.1	Tomato	cytosol	44.0	45.21
Bra031814.1-P	Field mustard	cytosol	44.67	44.37
Bra012887.1-P	Field mustard	cytosol, nucleus, plastid	46.0	44.23
Solyc02g089990.1.1	Tomato	nucleus	47.33	44.1
PGSC0003DMT400026013	Potato	cytosol, nucleus, plastid	47.33	43.83
KRH76906	Soybean	cytosol	45.33	42.77
KRH69989	Soybean	cytosol	46.0	41.82
KRH28562	Soybean	cytosol	44.67	41.1
Solyc02g065430.1.1	Tomato	cytosol	40.67	40.13
PGSC0003DMT400007187	Potato	cytosol	40.67	40.13
VIT_03s0063g01940.t01	Wine grape	cytosol	44.67	38.51
GSMUA_Achr7P27420_001	Banana	cytosol	42.0	38.18
KRH08345	Soybean	cytosol	42.0	36.84
GSMUA_Achr2P08730_001	Banana	cytosol	40.0	36.14
Zm00001d013311_P001	Maize	plastid	27.33	25.62
Zm00001d034190_P001	Maize	cytosol	30.67	25.27
TraesCS5D01G414200.1	Wheat	cytosol	29.33	25.0
TraesCS5A01G404200.1	Wheat	cytosol	29.33	25.0
TraesCS2A01G266100.1	Wheat	cytosol	27.33	24.85
Os03t0740200-00	Rice	plastid	28.0	24.71
TraesCS5A01G379900.1	Wheat	plastid	27.33	24.55
HORVU5Hr1G098280.1	Barley	cytosol	28.67	24.43
TraesCS5A01G404100.1	Wheat	cytosol	28.67	24.43
TraesCS5B01G383500.1	Wheat	plastid	28.0	24.42
Bra016439.1-P	Field mustard	cytosol	34.0	24.29
TraesCS5D01G389400.1	Wheat	plastid	27.33	24.26
TraesCS1D01G444800.1	Wheat	cytosol, plastid	30.0	24.19
Zm00001d033943_P001	Maize	plastid	26.67	24.1
Bra025866.1-P	Field mustard	cytosol	34.0	24.06
TraesCS5D01G414000.1	Wheat	cytosol	28.67	24.02
KXG37596	Sorghum	cytosol, nucleus, plastid	26.67	23.95
Os03t0768900-00	Rice	cytosol	28.0	23.86
TraesCS5B01G408800.1	Wheat	cytosol	28.0	23.86
HORVU5Hr1G098290.1	Barley	cytosol	28.0	23.86
TraesCS1A01G436300.1	Wheat	mitochondrion	30.0	23.68
Zm00001d013178_P001	Maize	cytosol	29.33	23.66
TraesCS2D01G257800.1	Wheat	plastid	30.0	23.44
TraesCS2B01G276100.1	Wheat	cytosol, extracellular, plastid	29.33	23.4
EER93387	Sorghum	cytosol	29.33	23.4
TraesCS5B01G409000.1	Wheat	cytosol	26.67	23.39
TraesCS5D01G414300.1	Wheat	cytosol	27.33	23.3
TraesCS1B01G471500.1	Wheat	mitochondrion	28.67	23.24
TraesCS1D01G444700.1	Wheat	cytosol, extracellular, peroxisome, plastid	28.67	23.12
Bra008267.1-P	Field mustard	nucleus	32.67	23.11
HORVU1Hr1G094330.1	Barley	cytosol	28.67	22.99
TraesCS2A01G266000.1	Wheat	plastid	29.33	22.92
TraesCS5D01G414100.1	Wheat	cytosol	27.33	22.91
Bra003714.1-P	Field mustard	cytosol	32.0	22.86
TraesCS5B01G408700.1	Wheat	cytosol	28.0	22.83
Bra012264.1-P	Field mustard	cytosol	31.33	22.71
TraesCS2D01G257700.1	Wheat	mitochondrion, nucleus, plastid	28.0	22.34
TraesCS1A01G436400.1	Wheat	plastid	28.0	22.22
TraesCS2B01G276000.1	Wheat	cytosol, nucleus, plastid	27.33	21.81
TraesCS5A01G404000.1	Wheat	cytosol	26.0	21.79
EER95817	Sorghum	nucleus	28.0	21.65
HORVU2Hr1G061800.1	Barley	plastid	27.33	21.58
Os07t0123100-00	Rice	extracellular	29.33	21.46
Zm00001d007974_P001	Maize	nucleus	27.33	21.24
Zm00001d018717_P001	Maize	cytosol	26.67	20.62
HORVU5Hr1G093900.1	Barley	plastid	24.0	20.57
HORVU5Hr1G098260.1	Barley	cytosol, mitochondrion	28.67	20.09
TraesCS5A01G403900.1	Wheat	plastid	29.33	18.88
HORVU2Hr1G061850.1	Barley	extracellular, plastid	20.67	15.66

Protein Annotations

EnsemblPlants:Bra010578.1	EnsemblPlants:Bra010578.1-P	EnsemblPlantsGene:Bra010578	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF17
PFAM:PF14009	SEG:seg	UniParc:UPI00025461D7	UniProt:M4D278	MapMan:35.2	:

Description

AT4G37240 (E=2e-049) | unknown protein

Coordinates

chrA08:-:15296420..15296872

Molecular Weight (calculated)

16208.4 Da

IEP (calculated)

7.823

GRAVY (calculated)

-0.320

Length

150 amino acids

Sequence
(BLAST)

001: MMEFANPVKV GYVLQKYPMC FICNSDDMDF DDAVSAISAE EELQLGQIYF ALPLRWLREP LKAEEMAALA VKASSALMRS GGGGGGSCRR KCIDHVVVSD
101: KYRLNVGSGD DTVGSGRVRR KGRNVDGGGG SSSSGRKRKC YAAELSTIEE

Best Arabidopsis Sequence Match ( AT4G37240.1 )
(BLAST)

001: MGICSSSEST QVATAKLILQ DGRMMEFANP VKVGYVLLKY PMCFICNSDD MDFDDAVAAI SADEELQLGQ IYFALPLCWL RQPLKAEEMA ALAVKASSAL
101: MRGGGGGCRR KCVEPIVSDK LRMRVGSGDD TVGSGSGRRK VRNGDGGGSV SSSRRRKCYA AELSTIDE

Arabidopsis Description

HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q8LE56]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.