Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G404100.1 | Wheat | cytosol | 95.45 | 95.45 |
| TraesCS5D01G414200.1 | Wheat | cytosol | 92.61 | 92.61 |
| TraesCS5B01G409000.1 | Wheat | cytosol | 89.77 | 92.4 |
| TraesCS5B01G408700.1 | Wheat | cytosol | 85.8 | 82.07 |
| Os03t0768900-00 | Rice | cytosol | 64.2 | 64.2 |
| Zm00001d034190_P001 | Maize | cytosol | 64.2 | 62.09 |
| EER93387 | Sorghum | cytosol | 64.77 | 60.64 |
| Zm00001d013178_P001 | Maize | cytosol | 62.5 | 59.14 |
| TraesCS2B01G276100.1 | Wheat | cytosol, extracellular, plastid | 56.82 | 53.19 |
| TraesCS2B01G276000.1 | Wheat | cytosol, nucleus, plastid | 55.68 | 52.13 |
| TraesCS1B01G471500.1 | Wheat | mitochondrion | 54.55 | 51.89 |
| TraesCS5B01G383500.1 | Wheat | plastid | 39.2 | 40.12 |
| GSMUA_Achr2P08730_001 | Banana | cytosol | 36.36 | 38.55 |
| GSMUA_Achr7P27420_001 | Banana | cytosol | 35.8 | 38.18 |
| Solyc02g089990.1.1 | Tomato | nucleus | 32.39 | 35.4 |
| PGSC0003DMT400026013 | Potato | cytosol, nucleus, plastid | 32.39 | 35.19 |
| Solyc03g044860.1.1 | Tomato | cytosol | 28.98 | 34.93 |
| KRH76906 | Soybean | cytosol | 31.25 | 34.59 |
| PGSC0003DMT400059007 | Potato | cytosol, nucleus, plastid | 28.41 | 34.48 |
| CDY45243 | Canola | cytosol | 27.27 | 34.29 |
| VIT_00s0207g00140.t01 | Wine grape | cytosol | 31.25 | 33.74 |
| VIT_00s0207g00180.t01 | Wine grape | cytosol | 31.25 | 33.74 |
| KRH28562 | Soybean | cytosol | 31.25 | 33.74 |
| Solyc02g065430.1.1 | Tomato | cytosol | 28.98 | 33.55 |
| PGSC0003DMT400007187 | Potato | cytosol | 28.98 | 33.55 |
| CDY55087 | Canola | cytosol | 28.41 | 33.11 |
| Bra031814.1-P | Field mustard | cytosol | 28.41 | 33.11 |
| CDX77946 | Canola | cytosol | 27.27 | 32.43 |
| Bra036862.1-P | Field mustard | cytosol | 27.27 | 32.43 |
| CDX81387 | Canola | cytosol | 28.41 | 32.26 |
| Bra012084.1-P | Field mustard | cytosol | 25.57 | 32.14 |
| CDY46066 | Canola | cytosol | 29.55 | 31.9 |
| AT3G50800.1 | Thale cress | cytosol, nucleus, plastid | 27.27 | 31.58 |
| CDX72612 | Canola | nucleus | 30.68 | 31.58 |
| Bra017789.1-P | Field mustard | nucleus | 30.68 | 31.58 |
| AT4G37240.1 | Thale cress | cytosol, nucleus, plastid | 30.11 | 31.55 |
| CDX73789 | Canola | cytosol | 27.27 | 31.37 |
| CDY42708 | Canola | nucleus | 30.11 | 30.99 |
| Bra037163.1-P | Field mustard | cytosol | 27.27 | 30.97 |
| CDY18612 | Canola | cytosol | 27.27 | 30.97 |
| TraesCS5B01G270300.1 | Wheat | plastid | 34.09 | 30.93 |
| CDY28982 | Canola | nucleus | 27.27 | 30.77 |
| AT5G66580.1 | Thale cress | cytosol | 27.27 | 30.77 |
| Bra032151.1-P | Field mustard | cytosol | 28.41 | 30.67 |
| CDX89594 | Canola | cytosol | 28.41 | 30.67 |
| CDY39665 | Canola | cytosol | 28.41 | 30.67 |
| TraesCS6B01G196600.1 | Wheat | plastid | 34.09 | 30.61 |
| CDX76853 | Canola | cytosol | 28.41 | 30.49 |
| Bra039208.1-P | Field mustard | cytosol | 23.86 | 30.22 |
| Bra012887.1-P | Field mustard | cytosol, nucleus, plastid | 26.7 | 30.13 |
| CDX90684 | Canola | cytosol, nucleus, plastid | 26.7 | 30.13 |
| AT2G23690.1 | Thale cress | cytosol | 27.84 | 30.06 |
| CDY22462 | Canola | cytosol, nucleus, plastid | 28.98 | 29.48 |
| VIT_03s0063g01940.t01 | Wine grape | cytosol | 28.98 | 29.31 |
| CDY24764 | Canola | cytosol, nucleus, plastid | 28.41 | 28.9 |
| CDY28078 | Canola | cytosol | 26.14 | 28.75 |
| TraesCS6B01G196500.1 | Wheat | plastid | 30.68 | 28.42 |
| CDX69254 | Canola | cytosol | 28.41 | 28.09 |
| KRH08345 | Soybean | cytosol | 27.27 | 28.07 |
| Bra010578.1-P | Field mustard | cytosol, nucleus, plastid | 23.86 | 28.0 |
| Bra011715.1-P | Field mustard | nucleus | 27.84 | 28.0 |
| CDX75606 | Canola | nucleus | 27.84 | 28.0 |
| KRH69989 | Soybean | cytosol | 26.14 | 27.88 |
| TraesCS7B01G296600.1 | Wheat | plastid | 30.68 | 27.69 |
| TraesCS5B01G270500.1 | Wheat | plastid | 33.52 | 27.31 |
| TraesCS7B01G296700.1 | Wheat | plastid | 27.84 | 25.52 |
| TraesCS5B01G270600.1 | Wheat | plastid | 31.82 | 25.34 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G408800.1 | EnsemblPlantsGene:TraesCS5B01G408800 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF63 | PFAM:PF14009 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5B:+:584245625..584246955
Molecular Weight (calculated)
18498.1 Da
IEP (calculated)
6.620
GRAVY (calculated)
-0.048
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLCVSYDAA TDGPATARVV LPSGELREYS PPATAALALE EVGQQGWFLC DAGRMGFAGS VAAMAAGEQL QPGQIYFVLP AEMLRRCLTG EEVASLAVKA
101: SAALVKAATA SSAGGRRRRG SVTPLVFTPS EEDYSDETLA KFAVKTAVPQ KRRVAYRGGR SPPRFSPDLT AILESE
101: SAALVKAATA SSAGGRRRRG SVTPLVFTPS EEDYSDETLA KFAVKTAVPQ KRRVAYRGGR SPPRFSPDLT AILESE
001: MGICSSYEST QVATAKLILH DGRMMEFTSP VKVGYVLQKN PMCFICNSDD MDFDNVVSAI SADEEFQLGQ LYFALPLSSL HHSLKAEEMA ALAVKASSAL
101: MRSGGSCGRD KCRCRRKCVS PVIFSARRVA AVGANGETRN GKRRGGGGSG RRKYAAKLSK IEE
101: MRSGGSCGRD KCRCRRKCVS PVIFSARRVA AVGANGETRN GKRRGGGGSG RRKYAAKLSK IEE
Arabidopsis Description
HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q680G2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.