Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G257700.1 | Wheat | mitochondrion, nucleus, plastid | 96.28 | 96.28 |
| TraesCS2A01G266100.1 | Wheat | cytosol | 83.51 | 95.15 |
| HORVU2Hr1G061800.1 | Barley | plastid | 93.09 | 92.11 |
| TraesCS2B01G276100.1 | Wheat | cytosol, extracellular, plastid | 84.57 | 84.57 |
| TraesCS1B01G471500.1 | Wheat | mitochondrion | 75.53 | 76.76 |
| TraesCS5B01G409000.1 | Wheat | cytosol | 53.19 | 58.48 |
| Zm00001d018717_P001 | Maize | cytosol | 59.57 | 57.73 |
| EER95817 | Sorghum | nucleus | 58.51 | 56.7 |
| Os07t0123100-00 | Rice | extracellular | 61.17 | 56.1 |
| TraesCS5B01G408800.1 | Wheat | cytosol | 52.13 | 55.68 |
| TraesCS5B01G408700.1 | Wheat | cytosol | 54.26 | 55.43 |
| Zm00001d007974_P001 | Maize | nucleus | 51.6 | 50.26 |
| TraesCS5B01G383500.1 | Wheat | plastid | 38.83 | 42.44 |
| CDX77946 | Canola | cytosol | 28.19 | 35.81 |
| Solyc02g089990.1.1 | Tomato | nucleus | 30.32 | 35.4 |
| PGSC0003DMT400026013 | Potato | cytosol, nucleus, plastid | 30.32 | 35.19 |
| GSMUA_Achr7P27420_001 | Banana | cytosol | 30.85 | 35.15 |
| Bra036862.1-P | Field mustard | cytosol | 27.66 | 35.14 |
| GSMUA_Achr2P08730_001 | Banana | cytosol | 30.85 | 34.94 |
| CDX73789 | Canola | cytosol | 28.19 | 34.64 |
| CDY28982 | Canola | nucleus | 28.72 | 34.62 |
| VIT_00s0207g00140.t01 | Wine grape | cytosol | 29.79 | 34.36 |
| CDY45243 | Canola | cytosol | 25.53 | 34.29 |
| CDX90684 | Canola | cytosol, nucleus, plastid | 28.19 | 33.97 |
| AT5G66580.1 | Thale cress | cytosol | 28.19 | 33.97 |
| Bra012887.1-P | Field mustard | cytosol, nucleus, plastid | 28.19 | 33.97 |
| VIT_00s0207g00180.t01 | Wine grape | cytosol | 29.26 | 33.74 |
| Bra012084.1-P | Field mustard | cytosol | 25.0 | 33.57 |
| CDX81387 | Canola | cytosol | 27.66 | 33.55 |
| CDY28078 | Canola | cytosol | 28.19 | 33.12 |
| AT3G50800.1 | Thale cress | cytosol, nucleus, plastid | 26.6 | 32.89 |
| CDY55087 | Canola | cytosol | 26.06 | 32.45 |
| Bra031814.1-P | Field mustard | cytosol | 26.06 | 32.45 |
| PGSC0003DMT400059007 | Potato | cytosol, nucleus, plastid | 25.0 | 32.41 |
| CDY18612 | Canola | cytosol | 26.6 | 32.26 |
| Bra037163.1-P | Field mustard | cytosol | 26.6 | 32.26 |
| PGSC0003DMT400007187 | Potato | cytosol | 26.06 | 32.24 |
| Solyc02g065430.1.1 | Tomato | cytosol | 26.06 | 32.24 |
| Solyc03g044860.1.1 | Tomato | cytosol | 25.0 | 32.19 |
| Bra039208.1-P | Field mustard | cytosol | 22.87 | 30.94 |
| KRH76906 | Soybean | cytosol | 26.06 | 30.82 |
| TraesCS7B01G296600.1 | Wheat | plastid | 31.91 | 30.77 |
| CDY46066 | Canola | cytosol | 26.6 | 30.67 |
| Bra032151.1-P | Field mustard | cytosol | 26.6 | 30.67 |
| KRH28562 | Soybean | cytosol | 26.6 | 30.67 |
| CDY39665 | Canola | cytosol | 26.6 | 30.67 |
| Bra017789.1-P | Field mustard | nucleus | 27.66 | 30.41 |
| CDX72612 | Canola | nucleus | 27.66 | 30.41 |
| TraesCS6B01G196600.1 | Wheat | plastid | 31.38 | 30.1 |
| CDX89594 | Canola | cytosol | 26.06 | 30.06 |
| AT2G23690.1 | Thale cress | cytosol | 26.06 | 30.06 |
| TraesCS6B01G196500.1 | Wheat | plastid | 30.32 | 30.0 |
| CDY42708 | Canola | nucleus | 27.13 | 29.82 |
| AT4G37240.1 | Thale cress | cytosol, nucleus, plastid | 26.6 | 29.76 |
| KRH69989 | Soybean | cytosol | 26.06 | 29.7 |
| CDX76853 | Canola | cytosol | 25.53 | 29.27 |
| KRH08345 | Soybean | cytosol | 26.6 | 29.24 |
| TraesCS7B01G296700.1 | Wheat | plastid | 29.79 | 29.17 |
| VIT_03s0063g01940.t01 | Wine grape | cytosol | 26.06 | 28.16 |
| CDY22462 | Canola | cytosol, nucleus, plastid | 25.53 | 27.75 |
| CDY24764 | Canola | cytosol, nucleus, plastid | 25.53 | 27.75 |
| Bra010578.1-P | Field mustard | cytosol, nucleus, plastid | 21.81 | 27.33 |
| CDX69254 | Canola | cytosol | 25.53 | 26.97 |
| Bra011715.1-P | Field mustard | nucleus | 25.0 | 26.86 |
| CDX75606 | Canola | nucleus | 25.0 | 26.86 |
| TraesCS5B01G270300.1 | Wheat | plastid | 27.66 | 26.8 |
| TraesCS5B01G270500.1 | Wheat | plastid | 29.26 | 25.46 |
| TraesCS5B01G270600.1 | Wheat | plastid | 28.19 | 23.98 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G276000.1 | EnsemblPlantsGene:TraesCS2B01G276000 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF62 | PFAM:PF14009 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:381316297..381317211
Molecular Weight (calculated)
19342.1 Da
IEP (calculated)
8.028
GRAVY (calculated)
-0.049
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLCMSSGGA AAAVRAEGEP ASTAMVLMPT GELREYPRPA TAAEALEDNS VAGDAGWFLC DADAMGFEGP VAAVAGAEEL RPGQIYFVLP AEARKNGLRR
101: EDLAALAVRA SAALVSKASA NASGSAGRRR RAGSVSPLVF AQPPEVDGTL AYKTVPALAA KRRPVARAKS AGRMQRFAPD LTAIPECE
101: EDLAALAVRA SAALVSKASA NASGSAGRRR RAGSVSPLVF AQPPEVDGTL AYKTVPALAA KRRPVARAKS AGRMQRFAPD LTAIPECE
001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
Arabidopsis Description
Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.