Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G444800.1 | Wheat | cytosol, plastid | 86.49 | 86.02 |
| TraesCS1A01G436300.1 | Wheat | mitochondrion | 81.62 | 79.47 |
| HORVU1Hr1G094330.1 | Barley | cytosol | 79.46 | 78.61 |
| TraesCS2B01G276000.1 | Wheat | cytosol, nucleus, plastid | 76.76 | 75.53 |
| TraesCS2B01G276100.1 | Wheat | cytosol, extracellular, plastid | 72.97 | 71.81 |
| TraesCS5B01G409000.1 | Wheat | cytosol | 51.35 | 55.56 |
| TraesCS5B01G408800.1 | Wheat | cytosol | 51.89 | 54.55 |
| Os07t0123100-00 | Rice | extracellular | 57.84 | 52.2 |
| TraesCS5B01G408700.1 | Wheat | cytosol | 51.35 | 51.63 |
| Zm00001d018717_P001 | Maize | cytosol | 53.51 | 51.03 |
| EER95817 | Sorghum | nucleus | 51.35 | 48.97 |
| Zm00001d007974_P001 | Maize | nucleus | 48.11 | 46.11 |
| TraesCS5B01G383500.1 | Wheat | plastid | 36.76 | 39.53 |
| CDY45243 | Canola | cytosol | 28.11 | 37.14 |
| CDX81387 | Canola | cytosol | 30.27 | 36.13 |
| GSMUA_Achr2P08730_001 | Banana | cytosol | 31.89 | 35.54 |
| CDX77946 | Canola | cytosol | 28.11 | 35.14 |
| Bra012084.1-P | Field mustard | cytosol | 26.49 | 35.0 |
| AT3G50800.1 | Thale cress | cytosol, nucleus, plastid | 28.65 | 34.87 |
| Bra037163.1-P | Field mustard | cytosol | 29.19 | 34.84 |
| CDY18612 | Canola | cytosol | 29.19 | 34.84 |
| AT5G66580.1 | Thale cress | cytosol | 29.19 | 34.62 |
| PGSC0003DMT400059007 | Potato | cytosol, nucleus, plastid | 27.03 | 34.48 |
| Bra036862.1-P | Field mustard | cytosol | 27.57 | 34.46 |
| Bra031814.1-P | Field mustard | cytosol | 28.11 | 34.44 |
| CDY55087 | Canola | cytosol | 28.11 | 34.44 |
| CDX73789 | Canola | cytosol | 28.11 | 33.99 |
| GSMUA_Achr7P27420_001 | Banana | cytosol | 30.27 | 33.94 |
| VIT_00s0207g00140.t01 | Wine grape | cytosol | 29.73 | 33.74 |
| Solyc03g044860.1.1 | Tomato | cytosol | 26.49 | 33.56 |
| VIT_00s0207g00180.t01 | Wine grape | cytosol | 29.19 | 33.13 |
| Solyc02g089990.1.1 | Tomato | nucleus | 28.65 | 32.92 |
| PGSC0003DMT400026013 | Potato | cytosol, nucleus, plastid | 28.65 | 32.72 |
| CDY28982 | Canola | nucleus | 27.57 | 32.69 |
| CDX90684 | Canola | cytosol, nucleus, plastid | 27.03 | 32.05 |
| Bra012887.1-P | Field mustard | cytosol, nucleus, plastid | 27.03 | 32.05 |
| Solyc02g065430.1.1 | Tomato | cytosol | 25.95 | 31.58 |
| PGSC0003DMT400007187 | Potato | cytosol | 25.95 | 31.58 |
| KRH76906 | Soybean | cytosol | 27.03 | 31.45 |
| KRH28562 | Soybean | cytosol | 27.57 | 31.29 |
| CDX76853 | Canola | cytosol | 27.57 | 31.1 |
| CDX72612 | Canola | nucleus | 28.65 | 30.99 |
| Bra017789.1-P | Field mustard | nucleus | 28.65 | 30.99 |
| AT4G37240.1 | Thale cress | cytosol, nucleus, plastid | 28.11 | 30.95 |
| AT2G23690.1 | Thale cress | cytosol | 27.03 | 30.67 |
| CDY46066 | Canola | cytosol | 27.03 | 30.67 |
| CDY39665 | Canola | cytosol | 27.03 | 30.67 |
| Bra032151.1-P | Field mustard | cytosol | 27.03 | 30.67 |
| CDY28078 | Canola | cytosol | 26.49 | 30.62 |
| CDY42708 | Canola | nucleus | 28.11 | 30.41 |
| Bra039208.1-P | Field mustard | cytosol | 22.7 | 30.22 |
| KRH69989 | Soybean | cytosol | 25.95 | 29.09 |
| CDY24764 | Canola | cytosol, nucleus, plastid | 27.03 | 28.9 |
| CDY22462 | Canola | cytosol, nucleus, plastid | 27.03 | 28.9 |
| CDX89594 | Canola | cytosol | 25.41 | 28.83 |
| Bra010578.1-P | Field mustard | cytosol, nucleus, plastid | 23.24 | 28.67 |
| KRH08345 | Soybean | cytosol | 26.49 | 28.66 |
| CDX69254 | Canola | cytosol | 27.57 | 28.65 |
| CDX75606 | Canola | nucleus | 27.03 | 28.57 |
| Bra011715.1-P | Field mustard | nucleus | 27.03 | 28.57 |
| TraesCS6B01G196500.1 | Wheat | plastid | 28.11 | 27.37 |
| TraesCS6B01G196600.1 | Wheat | plastid | 28.65 | 27.04 |
| TraesCS5B01G270300.1 | Wheat | plastid | 28.11 | 26.8 |
| TraesCS7B01G296600.1 | Wheat | plastid | 28.11 | 26.67 |
| VIT_03s0063g01940.t01 | Wine grape | cytosol | 24.86 | 26.44 |
| TraesCS5B01G270500.1 | Wheat | plastid | 29.73 | 25.46 |
| TraesCS7B01G296700.1 | Wheat | plastid | 25.95 | 25.0 |
| TraesCS5B01G270600.1 | Wheat | plastid | 29.73 | 24.89 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G471500.1 | EnsemblPlantsGene:TraesCS1B01G471500 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF62 | PFAM:PF14009 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:679673623..679674180
Molecular Weight (calculated)
19417.3 Da
IEP (calculated)
9.979
GRAVY (calculated)
-0.092
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLCRSTGSA VAAAARAKGQ PASTAIVLLP TGELREYSRP ATAGQALDDL VAGDAGWFLC DADEMAFDGR VAAMPQAEEL RPEQIYFVLP AEARQNGLRR
101: EDLAALAVSA SAALVNKANT ALSAGRRRRR AGSVAPLVFA PPQETVAYKT VAALAAKRRP VARAKSAGRM KPRFAPDLSA IPECE
101: EDLAALAVSA SAALVNKANT ALSAGRRRRR AGSVAPLVFA PPQETVAYKT VAALAAKRRP VARAKSAGRM KPRFAPDLSA IPECE
001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
Arabidopsis Description
Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.